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Hello. Thanks for the helpful repo.
I am trying to understand some of the decisions you all made and wanted to get some clarification. I don't see a step where you pre-filter for ambiguous Ns befo…
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Hi, Kai
Thank you for your tool. I am trying to apply it in my work.
I have microarray sequencing data of about 3000 individuals with ASA (**Asian** Screening Array) chips from Illumina. I …
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### Project short name:
PathogenicVariantsCardiomyopathies
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/…
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Hello
Using graphmap 0.5.1 I want to overlap illumina MiSeq reads derived from enrichment sequencing. The reads are enriched for a large gene family. I would hope for large numbers of relatively shor…
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Seqspec (https://github.com/IGVF/seqspec) is a machine-readable specification for libraries, a file format based on yaml, that enables sequence read annotation. The scope is broader than ours, includi…
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## Bug Report
### Affected tool(s)
IlluminaBasecallsToSam
### Affected version(s)
- [x] Latest public release version [2.25.6]
### Description
I get a `java.lang.NullPointerException` wh…
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### Enzyme, ADAR (proof-read and correct mistakes in RNA)
[**ADAR editing enzymes** are found in all multicellular animals and are conserved in sequence and protein organization. The number of ADAR g…
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Background
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I am currently using the pre-assembly processing step of the [ATLAS pipeline](https://github.com/metagenome-atlas/atlas) to generate enhanced input sequencing reads for FGS++…
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https://blog.software.illumina.com/2020/07/30/announcing-the-release-of-bcl-convert-software/
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I tried the program on PacBio hifi reads, which were for amplicon sequencing of some plant DNA samples, barcoded on both ends. The reason is that LIMA generated very simple report missing a lot of inf…