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When I run `run_example.sh` I'm getting the following error:
```bash
$ ./prepareData.sh
$ ./run_example.sh
+ rm -f example/aligned.bioc.xml example/sentences.bioc.xml example/kb.tsv example/mini…
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## 1. Bug description
Due to an issue as described in https://github.com/neurogenomics/MungeSumstats/issues/117, I ran MSS with tabix_index=FALSE and then ran tabix.createIndex(fullSS_path). After …
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The code currently fails to run with `use_immunity_by_allele == false` with this error:
```
initialize_state()
verify(0.0, s)
t = 0
ERROR: LoadError: type ImmuneHistoryByGene has no field vd
S…
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Dear JOSS Editors,
Our team has been working on an extensive R-interface ([rTASSEL](https://github.com/maize-genetics/rTASSEL)) for the open-source Java software [TASSEL](https://bitbucket.org/tass…
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Dear Yoav,
I have found some significant Kmers for which I obtained the population presence/absence pattern using the `filter_kmers` option. Now, I want to do a LD analysis and generate plots like in…
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Hello,
I'm trying to run BHR in a bivariate model. I have followed the instructions in the wiki and the examples and when I run my data I have this error:
```
> BHR(mode = "bivariate",
+ …
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probably using a spark job against https://bigquery.cloud.google.com/table/genomics-public-data:linkage_disequilibrium_1000G_phase_3.super_pop_EUR?tab=preview
for now we will use the postgap table an…
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## 1. Bug description
This is the continuation of a bug description in #113.
I tried to pass to finemap_loci, the munged data, and the issue with sample size keeps arising
When I pass an intege…
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Hi Dear friends
I am working on a selection strategy on a species of forest trees. In this specie the LD is about 0.25 in 2500 bp windows. Its historical population has also not been studied. The ave…