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---
id: smoldyn
version: "2.72"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/1e545d32730daf95d805b156aed9ef086ee8dd82/biosimulators.json
specificationsPatch:
version: "2.72…
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equations [here](https://en.wikipedia.org/wiki/Lotka%E2%80%93Volterra_equations)
using the new model spec on the `refactorcpp` branch
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Hi,
Our CEPHIL team has been having trouble running block 17 of the following notebook code for "Agent-based modeling via graph rewriting" blog.
https://nbviewer.org/github/AlgebraicJulia/Algeb…
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Hey,
I encountered some weird issue, where memory seamingly leaks during `ForwardDiff.gradient(ek1_loss)`. I was able to boil it down to the snippet below:
```julia
using ComponentArrays
using…
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## Problem
The Lotka-Volterra simulation we programmed is not very elegant nor practical.
## Solution
- [x] Simulate a real-world problem by refactoring the predator and prey dynamics as totally in…
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After stratifying a regnet the export to JSON fails with a basic example for some reason. I also noticed that regnet's don't have the normal export (e.g. `from mira.modeling.amr.petrinet import templa…
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# Description
The data set `Lotka-Voltera_00` referenced in problem 8M10 seems to be missing from the `Exercises/data` folder.
**Reference**
Page 258. [https://bayesiancomputationboo…
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http://www.3d-meier.de/tut19/Seite0.html
Has pictures as well, some are super cool.
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So I'm running into a problem where I want to rewrite all of the matching patterns in this graph:
![original](https://user-images.githubusercontent.com/78235421/195672269-75f7dcd7-647f-4089-8f7f-18e6…
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I'm trying out the various sensitivity algorithms from this package, and ran into unexpected behaviour with `ReverseDiffAdjoint`.
When running this simple example:
```julia
using OrdinaryDiffEq, Sc…