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Hi Lilin,
I'm very thank you for developing this tool.
I want to draw a Circular Manhattan plot between p-value and no p-value.
for example,
SNP CHR BP trait1 trait2 trait3
1_1273278 …
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Hi Team,
Appreciate if someone can advise me on this issue:
**Previous steps:**
1. SNP and COG association with fixed effects model
**Pyseer having issue:** K-mer association with mixed effec…
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Dear Developer
Thank you for developing this software.
I'm trying to run example datasets given pleiofdr.
I'm getting an error regarding Manhattan plot generation stage.
Error-
##################…
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Hello Lilin,
I recently started to use CMplot. It's a great package
I'm trying to make a circular manhattan plot. I can't add legend name (traits) for each circle.
If I write `cir.legend=TRUE` noth…
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Hi @YinLiLin ,
I would like to draw a Manhattan Plot to illustrate the distribution of Fst for each chromosome, so the range of y-axis should be set from 0 to 1. when I set the ylim as (0,1), I got t…
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![Cir_Manhtn test_r0 5_H2_cex0 35_thres](https://github.com/YinLiLin/CMplot/assets/12898710/75f0d2c5-80d2-4d43-9670-7cb7b5b144c4)
Dear Lilin,
thanks a lot (and congratulations) for developing such…
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Hi @YinLiLin ,
I'd like to compare two data sets via line chart and draw them in one graph. While I tried the parameter multitrack = TRUE, it seems that the package connect all possilbe node throug…
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Performing meta-analyses HIV Acquisition.
The parent issue is GitHub Issue 97.
## Analysis Description
[hiv-acquisition-gwas-meta-analysis-description.xlsx](https://github.com/RTIInternation…
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Not sure why but the latest build has broken code filtering via the dropdown table and the network plot. Probably has something to do with migrating to meToolkit but needs investigation.
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Hi, there:
I am trying to run "tabix my.GWAS.gz" file. my.GWAS.gz file is tab delimited and it has columns such as CHR POS SNP REF ALT BETA SE P N. However, I got the error messages of "[E::get_i…