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This step is to provide a ground state assessment of what pathways for orthology projections look like that are imported from Reactome. Decisions to be made:
- [x] which species?
- [x] All pathways o…
ukemi updated
10 months ago
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Title explains (most of) it all:
![image](https://user-images.githubusercontent.com/2678599/193695588-ad938341-883a-4a6e-8f44-337b6332bd1d.png)
This View button should go to:
![image](https://user-…
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Hello,
We will make the term "GO:0098772 molecular function regulator" 'do not annotate', see https://github.com/geneontology/go-ontology/issues/18868.
Please try to annotate to a more specifi…
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Originally from @ukemi
```
The production directory for the Noctua annotation files seems to have
disappeared. I could have sworn I showed it to the group on Monday during
the training session. D…
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There are various tickets in this repo that are very old and related to RNAcentral. Let's close these.
We should clarify the situation. I think it is as follows
- every authoritative group is re…
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Minerva calculates related taxa, based on gene products, each time it saves a model. It seems like these persist even if those genes are removed from the model. Minerva should clear old taxon assignme…
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Examples (just two random samples):
- http://identifiers.org/uniprot/O88568 (in http://model.geneontology.org/SYNGO_1598)
- http://identifiers.org/uniprot/A5D7B9 (in http://model.geneontology.org/S…
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From 2021-06-08 MOD imports call:
We want to align how date information is being expressed in the import GPAD files with how dates are modeled in the ShEx.
This will ensure we don't lose any inf…
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We need to update the default properties for evidence handling:
- AnnotationProperty for evidence is: `RO:0002612` "axiom has evidence"
- ObjectProperty for linking a publication: `IAO:0000136`
- Type…
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What do you think about allowing ORCIDs in the Assigned_by field?
http://geneontology.org/page/go-annotation-file-gaf-format-21