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The issue is with the `calculate_custom_traits()` function, which uses `pivot_wider()` to create columns for each glycan. This does not work when there are analytes without a glycan.
Will have to …
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I want use default camp checkpoints to predict the affinity between peptide and protein, How to generate 'pep_concat_seq' and 'prot_concat_seq' in my own camp input data ?
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Hi, thank you for developing such an excellent software.
### pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ?
#### Description
I have successfully run pVACse…
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Hi,
I am interested in modifying FragFold to support custom tiling offsets for fragment generation. For example, a 3 aa increment when generating fragments could speed up peptide binding prediction…
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```
In the current specification it's stated (page 26): "The protein's accession
the peptide is associated with. In case no protein section is present in the
file or the peptide was not assigned to …
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A script that converts a peptide file into a GTF/GFF file. The input for it should be a GFF/GTF file, a fasta file, and a tab delimited file.
The output:
A GFF file of mapped peptides. It should show…
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definition:
intersection_of: CHEBI:16670 ! peptide
intersection_of: has_role CHEBI:33281 ! antimicrobial agent
Example of use:
GO:0002775 ! antimicrobial peptide production [DEF: "The synthesis or …
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Hiya!
Thanks for such a wonderful package. I'm working with a lot of peptides that I order from GenScript. A lot of these have modifications or are non-natural amino acids (see [here](https://www.g…
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Thanks for amazing notebook!
Support for cyclic peptides was recently proposed here:
https://www.biorxiv.org/content/10.1101/2023.02.25.529956v1
It's already supported in ColabDesign but not in…
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Hello, liu. Your work is insighting and very useful to my work on peptide discovering, will you please update the implementation for the hard-meta batch in the current repository?