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I thought this idea was large enough where it should be it's own issue even though it's part of #1124 .
@acesnik wants some HTML reports and I think a lot of users really want some way to easily/gr…
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You may want to view this on GitHub since I have embedded tables and such. https://github.com/MoseleyBioinformaticsLab/MESSES/issues
I am going to start with a short description of how ISA assays w…
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I'm trying to use the search gui and peptide shaker for peptide mass fingerprinting. Both seem pretty intuitive and complete, but I can't make progress on some algorithms in the search gui, but mostly…
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gLable batch works for one of my tasks,
but in a recent task, it output
"**** Finish batch output ****
0 GPSMs, 0.002 seconds
**** Finish batch output ****
no psm of spectrum "02-06-17_insoln…
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Do we really need `relativeIntensity` as a field? I would rather define an accessor method for that and calculate the relative intensities on the fly. Same for peaks count or tic, IMHO it is better to…
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# R - low-level interface
CP, Please review and assign to LS
Input data:
mZ and intensity are obligatory the other attributes are not
```
x1
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I have been trying to read in NIST MS/MS spectra using a function that looks like this:
`d spectraVariables(d)`
`
[1] "msLevel" "rtime" "acquisitionNum" …
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IDPEP crashes on the following idXML [1] with
"No data collected. Check whether search engine is supported."
The IDs come from several fixed MSGF+ searches combined using ConsensusID. ConsensusID fo…
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"task loading from C:\Users\Administrator\.PepPre\v1.3\PepPreIsolated.task
task loading from C:\Users\Administrator\.PepPre\v1.3\PepPreGlobal.task
task loading from C:\Users\Administrator\.PepPre\v1…
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Here a file with all the USIs corresponding to the reanalysis performed using quantms and DIANN workflow.
[PXD019909.1-USI.txt.zip](https://github.com/HUPO-PSI/usi/files/14040631/PXD019909.1-USI.t…