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**Feature:**
Extend the `polish` module to add KEGG gene, UniProt as well as RefSeq identifiers.
**Implementation:**
- [x] For bacterial strains where the genome is in the KEGG database:
- [x] User…
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Hi @jchodera or @JenkeScheen - could you please direct me to the file I need to edit to add myself as a Diamond team contributor to ASAP TEPs?
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After some thought / discussion, it may be best to define a few data structures, one to wrap the output of typical pLMs (i.e. ESM2, Protrans, ...), and data structures that wraps the protein vectors g…
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I'm trying to parse a `.gb` file that I exported via Benchling (it shouldn't make a difference), but for some reason `readgbk` just keeps running without ever ending. BioPython parses the file, so I a…
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Paper curated by @MPiovesana
https://canto.phi-base.org/curs/6b98cb8ecdf4aa5f
**See latest comment for updated info on genotype creation!**
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hello Roleren,
recently, I was adding some virus genes in human genome, I did it like add fasta sequence in human fasta and make some simple annotation info at the tail of gtf files, just like…
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**Submitting author:** @SarahMaman (MAMAN Sarah)
**Repository:** https://forgemia.inra.fr/bios4biol/intronseeker
**Branch with paper.md** (empty if default branch): master
**Version:** v1.0
**Editor:*…
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https://canto.phi-base.org/curs/78fb5c4223c6062b
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Thank you very much for making this amazing tool. This is becoming very useful in my research.
I performed a metaSpades assembly on pairend 150bp Illumina reads and subsequently employed VirSorter…
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Hi @ValWood, I have a question about the physical interactions in Canto for the documentation.
Does it ever matter the order in which the genes are listed? My intuition is that:
* For `aff…