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Had successfully built GPU environment and the alphafold docker image (AlphaFold V2.3.2) on the Centos8.
**When I run the alphafold by the following command:**
python3 docker/run_docker.py…
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#### Summary: NCBI sequence identifiers which have been removed from the NCBI data base cause a "no link/record returned for: xyz".
#### Description:
When attempting to use the ncfp command to …
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Hi, scychon!
I come back again. After installing this plugin, I have used it in my test system.
My test system is very simple which is a short peptide in bulk water and on water/air interface. Each…
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Please see draft spec for pangenes search query - to find ~paralogous/allelic genes (corresponding by homology and synteny):
https://github.com/legumeinfo/website-ui-specs/tree/main/pangenes-search
…
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Dear dMaSIF team and users,
I am using the Google Colab version of dMaSIF to get the surface predictions from the model protein pdb files.
Among the outputs of dMaSIF I found predfeatures_emb1.npy…
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Why is this happening? Is this supposed to happen?
```
4091 Error in bbbq::create_random_peptides(n_peptides = n_peptides, n_aas = n_aas) :
4092 unused argument (n_aas = n_aas)
4093 Calls: -…
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This step follows on from Issue #2 where you will have prepared your ligands from SMILES strings using Gypsum-DL. For this virtual screen I have used the [SARS-CoV2 helicase - holo complex, nsp13](htt…
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Hi !
I am a newbie, I am trying to find some tools to do QM/MM or QM/MM MD with protein and Small molecules.
I think maybe i can use ORCA&Chemshell&some MD software.
But today i find your ASH.
C…
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@sammyjava has a `5.1.0.4-model-changes` branch that adds support for Intermine version 5.1.0.4, which is required to integrate the [trait association search web component](https://legumeinfo.github.…
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I have come across to code to possibly streamline this notebook.
We should look at updating and making this notebook more robust..
https://github.com/RobertsLab/code/blob/master/10-blast-2-slim.i…
sr320 updated
5 years ago