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Hello,
I tried running the pipeline on RiboSeq+RNAseq data, and it ran until almost the end when it failed:
```
Error executing process > 'put_rnaseq_into_ribo (1)'
Caused by:
Process `pu…
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https://mp.weixin.qq.com/s/ylXcoXlsWmMRiUByvz6SrA
ixxmu updated
2 years ago
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In:
pombe-embl/external_data/qualitative_gene_expression_data/Duncan_29432178.txt
The type column is "translation" so it has translation increased and translation descreased. Is that the same as …
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_31Jan2020 email to Xusheng Wang (xusheng.wang@und.edu)_
Hello Xusheng!
I'm working with our PsychENCODE collaborators to develop metadata templates for assay data. Since your lab is going to b…
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1. This program is so efficient and I used it to run my data very smoothly. How can I use package to summary 3 nt periodicity for specific RF length like 32 nt, 31 nt in my data. I know the metagene…
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I am running the `systemPipeRIBOseq.Rmd` in ~/Data School/Packages/systemPipeRdata/exdata/workflows/riboseq with `.libPaths(c("C:/Users/ale097/Data School/Packages"))` defined prior to loading librari…
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Thanks a lot for a great tool. I'm now in the middle of understanding how it should work.
I'm trying to run your workflow for Ribo-Seq, but have some errors on the way. I'm working on an iMac and n…
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Hello,
I would like to run the pipeline on some mouse Ribo-seq data, and I was wondering if you might have a mouse annotation file, such as this one for human: appris_human_24_01_2019_actual_region…
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Hi,
I am trying to use this pipeline but I have run into some issues. Several scripts include `import rphelper as rph` but I can't seem to find this package. It is not listed in the requirements. …
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Function `metaheatmap_psite` produces a following error when ran on a list with only 1 sample
```
Error in metaheatmap_psite(reads_psite_list, annot, sample = sample_name, : …