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smithlabcode
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ribotricer
A tool for accurately detecting actively translating ORFs from Ribo-seq data
http://doi.org/djv4
GNU General Public License v3.0
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Handling read-level P-Site offsets
#162
mosi223
closed
1 week ago
4
Unannotated ORFs
#161
singhbhavya
closed
1 week ago
10
Question about Multi-Mappers
#160
singhbhavya
closed
2 months ago
1
Question about handling of non-unique alignments
#159
mosi223
closed
2 months ago
2
Fixing linter errors
#158
andrewdavidsmith
closed
2 months ago
1
Peptide search from ORFs.
#157
bshim181
closed
3 months ago
1
ORF Profile
#156
bshim181
closed
3 months ago
1
Add new meta_min_reads CLI param
#155
pinin4fjords
closed
3 months ago
3
Control over minimum coverage + better error messages
#154
pinin4fjords
closed
3 months ago
2
[BUG] speficying unstranded data ('no') leads to error
#153
pinin4fjords
opened
3 months ago
3
Prepare ORFs step
#152
bshim181
closed
1 week ago
2
Translation initiation analysis
#151
colin986
closed
5 months ago
1
Could not solve for environment specs: click-help-colors >=0.3 , which does not exist (perhaps a missing channel)
#150
spencer411
closed
5 months ago
1
Unstranded Library
#149
bshim181
closed
6 months ago
1
About the read density in the output file
#148
lbwfff
closed
6 months ago
1
What does the ORF_ID represent?
#147
carajj
closed
6 months ago
1
[BUG]
#146
fork16
closed
1 week ago
1
ORF Annotations
#145
bshim181
opened
9 months ago
1
I have confuse about the profile column from translating_ORFs.tsv
#144
fork16
closed
9 months ago
1
Ribotricer Output
#143
bshim181
closed
3 weeks ago
5
Translation of ORFs
#142
SuiyueWestlake
closed
11 months ago
1
Ribotricer Output
#141
bshim181
closed
11 months ago
1
Empty result in first step (Preparing candidate ORFs)
#140
SuiyueWestlake
closed
11 months ago
4
Ribotricer Output
#139
bshim181
closed
11 months ago
3
[BUG] Weird results when using profile from Ribotricer output ?
#138
polklin
closed
1 year ago
2
Question on prepare-orfs "--longest" flag
#137
ericmalekos
closed
1 year ago
1
Trouble installing with bioconda [BUG]
#136
ericmalekos
closed
1 year ago
2
ORF_ID naming confusion
#135
Tim-Yu
closed
1 year ago
5
Unable to run learn-cutoff function
#134
bsms9e0n
closed
11 months ago
16
about 3nt periodicity output
#133
Jiahuan90
closed
1 year ago
4
Bump matplotlib from 3.5.3 to 3.6.0
#132
dependabot[bot]
closed
1 year ago
0
Bump tqdm from 4.64.0 to 4.64.1
#131
dependabot[bot]
closed
1 year ago
0
About definition of ORFs
#130
Jiahuan90
closed
1 year ago
1
Bump matplotlib from 3.5.2 to 3.5.3
#129
dependabot[bot]
closed
1 year ago
1
Bump pyfaidx from 0.7.0 to 0.7.1
#128
dependabot[bot]
closed
1 year ago
0
Bump pyfaidx from 0.6.4 to 0.7.0
#127
dependabot[bot]
closed
2 years ago
0
Bump pysam from 0.19.0 to 0.19.1
#126
dependabot[bot]
closed
2 years ago
0
Option to include multimapping reads?
#125
PVlasov93
closed
2 years ago
1
Bump matplotlib from 3.5.1 to 3.5.2
#124
dependabot[bot]
closed
2 years ago
0
Bump click from 8.1.2 to 8.1.3
#123
dependabot[bot]
closed
2 years ago
0
p-site offsets and metagene profiles
#122
p-levy
opened
2 years ago
5
Bump tqdm from 4.63.1 to 4.64.0
#121
dependabot[bot]
closed
2 years ago
0
Bump click from 8.1.0 to 8.1.2
#120
dependabot[bot]
closed
2 years ago
0
Bump click from 8.1.0 to 8.1.1
#119
dependabot[bot]
closed
2 years ago
1
Bump pysam from 0.18.0 to 0.19.0
#118
dependabot[bot]
closed
2 years ago
0
Bump click from 8.0.4 to 8.1.0
#117
dependabot[bot]
closed
2 years ago
0
Bump tqdm from 4.62.3 to 4.63.1
#116
dependabot[bot]
closed
2 years ago
0
About the length of reads
#115
lbwfff
closed
2 years ago
3
Bump tqdm from 4.62.3 to 4.63.0
#114
dependabot[bot]
closed
2 years ago
1
Bump click from 8.0.3 to 8.0.4
#113
dependabot[bot]
closed
2 years ago
0
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