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this will make it easier for the user to select the targets, by simply copying the rules from the dry-run
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### Description of feature
Differential splicing is a frequent consequence observed in RNA-Seq data. rMATS (https://rnaseq-mats.sourceforge.net/) is the most frequently used analysis tool, providing …
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### Description of the bug
When a config variable uses `${projectDir}` in its definition, the `nf-core schema build` tool reports that the pipeline config does not match the schema and requests addin…
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### Description of the bug
When choosing to include the RSEQC analysis, an error is generated for most of the samples.
Below is an example of the error generated in the work directory for a failed s…
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The Good:
- Nice that you included a picture!
- The diagram helps a lot with following the pipeline steps.
- The project description is not very long but does a very good job of giving the reader a…
yavyx updated
5 years ago
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### Description of feature
As discussed on [Slack](https://nfcore.slack.com/archives/CE5LG7WMB/p1653570302574989), `nf-core download` started failing with the nf-core/rnaseq pipeline because the `con…
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Requested in #311 by @jcgrenier:
> Another useful QC that could be integrated would be one using Genotyping array data. As sometimes we like to do analysis like eQTL analysis and use both genotypin…
ewels updated
3 years ago
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Does `TidyMultiqc` supports the new json format on `MultiQC` version `1.20` (multiqc/megaqc#519)?
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Hi @vsoch , I finally had the chance to work on this one today!
Look at this: https://github.com/marcodelapierre/demo-shpc-nf
It's derived from the RNAseq pipeline that the Nextflow authors use …
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i'm a newbie to sequencing analysis & working on a pooled sample project for the first time. i've found [this slide deck](https://yeamanlab.weebly.com/uploads/5/7/9/5/57959825/snp_calling_pipeline.pd…