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Hello,
I am trying to run the ARTIC pipeline on the Singularity profile with the new ARTIC V4 primer scheme set (https://github.com/artic-network/primer-schemes).
I am running the Nextflow pipeli…
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Hello, I am trying to map the coronovirus to reference but stuck at the first step of creating the index files.
the command I use is following: `STAR --genomeDir /ref/SARS_cov_2.fasta --readFilesIn…
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### Colocar um resumo ou as partes mais importante do abstract (4 linhas máx.) dos seguintes artigos:
- [ ] _P. Zhou et al., A pneumonia outbreak associated with a new coronavirus of probable bat o…
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# Detect SARS-CoV-2 virus using Near-infrared spectroscopy – Hefnawi 🦙
A work in-progress that started on 25 March, 2020. Prologue Near-infrared spectroscopy (NIRS) is nothing new, however, it&rsquo…
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**Snakemake version** 5.30.0
Note the Snakemake version for which you experience the bug.
Always make sure to try out the latest version before creating a new bug report.
**Describe the bug**…
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- [ ] Obtain datasets for SARS-CoV-2, HIV-1 and the human genome
- [ ] Align sequence databases - MAFFFT?
- [ ] Theta - Watterson's, Pi, lamarc, BEAST
- [ ] Analyze results - significance between s…
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I am trying to create a VCF from an assembly graph using `vg deconstruct` for [COVID-19](https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-xdihpa8nzv906l8):
```
vg view -F SARS-CoV-2.…
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I'm noticing that if you 1st map data to human, take only un-mapped reads and then run periscope, the final periscope counts are the same, however the mapped read count differs.
Using all reads
…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/418
ORF1a:A690V is in both EG.5 and XBC.1.6. This lineage at about 10% in Chile for a while. This lineage has been dec…
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Title: SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway
epithelial cells and is detected in specific cell subsets across tissues
# General Information
## Please paste…