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Hi! I don't know if this repository is still maintained, but Struo almost looks like the solution for my problem, so I will just try. I would like to create a custom reference for MetaPhlAn3. I am onl…
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Hi developer,
I found that the function of script "assign_taxonomy.py" depends on qiime1. But qiime1 is too outdated to install by typing "conda create -n qiime1 python=2.7 qiime matplotlib=1.4.3 m…
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When running normalize_table.py the "taxonomy" observation metadata is not properly encoded in the output file.
1) When using the `-a DESeq2` the taxonomy data is not included at all in the output f…
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Hello Emese,
Firstly thank you for creating this repository, it is a really nice simple-to-use set of functions for COI databases. I'd like to ask your opinion on using it for making databases for …
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Posted here!
https://taylorreiter.github.io/2022-07-28-From-raw-metagenome-reads-to-phyloseq-taxonomy-table-using-sourmash-gather-and-sourmash-taxonomy/
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Hi @sckott, you asked for my thoughts on binomen on issue #9 and I thought a new issue might be a better place to respond.
I like the package overall. It has a clean and straight forward style that …
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![Screenshot from 2021-05-26 14-32-21](https://user-images.githubusercontent.com/58941541/119714173-37b02180-be6b-11eb-868f-8411c2cfbf09.png)
Hello dear colleagues! I'm a student. And i just starte…
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- [ ] Implementar en front la "decodificación" del abstract que se entrega en _Inverted Index_
- [ ] codificar en inverted index el abstract de scholar
- [ ] codificar en inverted index el abstract …
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Hello,
thank you for creating this tool.
I have a question about the taxonomy assignment.
I have used the command "mmseqs filtertaxseqdb" to filter the on interest sequence by taxon ID.
It work…
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**Improvement Description**
[Taxon path padding](https://github.com/qiime2/q2-taxa/blob/2f9919e9f72dd923b2981c63f7f45da52216cd97/q2_taxa/_util.py#L27) can be made rank aware to avoid the following si…