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Note that this works in Python 2.7, but not in Anaconda Python 3.5 on OS X and Linux. Something is wrong with the file handling. I can't figure out what, but this file does not exist.
It looks like…
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I'm was using this code (version 1.28.1) to bin 1.7M datapoints into hexagon bins for an online web graphic. I exported each bin's center using `hexbin$xcm` and `hexbin$ycm`; however, when I attempte…
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Dear developer,
I am using this method in Seurat 3.1.5 in windows 10. I extracted the libfftw3-3.dll and FIt-SNE.exe in bin/ folder and included the following commands in my code:
```
source("D…
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This one: https://storage.googleapis.com/tfjs-examples/tsne-mnist-canvas/dist/index.html
This demo page is obtained as an example of tfjs-tsne here: https://github.com/tensorflow/tfjs-tsne ("Exampl…
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Thanks for your excellent work. However, there are problems when I test with your code.
In line 6
```
from sklearn.manifold.t_sne import _joint_probabilities, _joint_probabilities_nn
```
Should i…
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- optionally output dot file of graph?
- tsne/other cluster visualization
- ref @mr-eyes work with kSpider/dbretina
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I installed this.
It works inside the directory.
When I move it too dist-packages, it breaks.
It is on sys.path
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I'm trying to install MulticoreTSNE into a Docker image built on top of the Jupyter Minimal distribution (Anaconda Python, etc.). Previously I was able to run this without a hitch. I've tested the fol…
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Just had a user request for adding a color-blind color pattern for the UMAP display.
We could follow the suggestion based on Wong B's manuscript[, "Points of view: Color blindness." Nature Methods…
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Hi,
Great package. But I'm having issues converting a seurat object to h5ad file and then reading that file back in. I analyzed my data using Seurat and saved it as sc.h5ad
```
> SaveH5Seurat(…