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We noticed a strong drop in precision for SNVs (~10% for tumor-normal mode, ~20% in tumor-only mode) between releases 4.1.7.0 and 4.2.6.0.
With more testing using the HCC1395 somatic benchmark (https…
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Hello,
I have an issue while running MANTIS on exome datasets.
I wrote the following code lines :
`python2.7 mantis.py -b ../../Test_MANTIS/genome_scan.bed --genome ../../Test_MSISensor/Indexe…
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Hi,
I have a question regarding the post step.
I ran rMATS, using Docker, without separating the steps and I got the results.
Now I'm interested in running again rMATS, but with the "--paired-stat"…
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Dear,
I try to ran bayestyper. First of all I ran KMC and bayestypertools without any problem, but when I want to run bayestyper cluster appear the following error:
bayesTyper: /isdata/kroghgrp/…
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Will the Pycomplexheatmap support Kmeans clustering when using ClusterMapPlotter function. I just mean that first use Kmeans to form different goups, then run hierarchical clustering within each grou…
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I successfully analysed the example files with RunTheta, however when I tried to analyse my sample it produces an error. I have the normal and primary tumour whole exome sequencing bam files. I create…
SNRNS updated
6 years ago
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### Search before asking
- [X] I have searched the Ultralytics YOLO [issues](https://github.com/ultralytics/ultralytics/issues) and found no similar bug report.
### Ultralytics YOLO Component
…
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Hi,
I would like to thank you for sharing this interesting work. However, I am trying to apply this experiment on the same data that you use, it shows me that tumor type and mode required. Can you k…
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Hello GATK team!
## Bug Report
### Affected tool(s) or class(es)
mutect2
### Affected version(s)
- Latest public release version: 4.2.6.1
### Description
getting fail for all scatt…
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Sorry, I dont know how to add the project into Roddy as the applicationProperties.ini has been set