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Ben has a new assay that can measure expression levels for 100 - 1k transcripts with very low input material and cost. He also has some micro-dissection technology to sample a small piece of tissue fr…
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There seems to be confusion surrounding the use of the GT and AD keys in the INFO field.
The GATK Mutect2 tool would produce a VCF file containing the following GT:AD values for a sample containing…
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#### Summary:
I re-installed my rstan package earlier today, and warning msg starts to show up, and also some models that used to work ok now cannot be run.
#### Description:
After re-instal…
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We are now supporting [study tags](https://docs.cbioportal.org/5.1-data-loading/data-loading/file-formats#study-tags-file), but we don't have any tags curated in our public portal. Let's start to coll…
jjgao updated
3 years ago
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double check the KM stats reported here: https://xenabrowser.net/?bookmark=ac5d07ff142ac9467b08faae2545659d using R
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Hi!
I found the group 1 data in MNI BITE website: http://nist.mni.mcgill.ca/bite-brain-images-of-tumors-for-evaluation-database/. But there are only 2d/3d ultrasound data without the tracking 4*4 pr…
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The ES index built by merge_generated_metadata.py assumes 1) there's a normal and tumor and 2) there's only one run of each analysis. This is wrong, there can be multiple tumors per donor. Also, we …
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**🚀 Feature**
Sampler which is guaranteed to include all voxels with a certain label value.
**Motivation**
I am doing tumor localization/segmentation, and I need to sample patches of the imag…
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### Deep Learning Simplified Repository (Proposing new issue)
:red_circle: **Project Title** : Glioma MRI Human Brain Tumor Detection
:red_circle: **Aim** : The aim is to identify the brain tumors f…
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Currently we compare peptide sequences against a reference proteome from Ensembl.
It would be more correct to create a proteome that incorporated SNPs that impact protein sequence and then look f…