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Thanks for porting this package from R.
I'm the developer of [Marsilea](https://github.com/Marsilea-viz/marsilea), a visualization package that can easily replicate plots in ktplots. Would you lik…
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**Use Case: Provide Multiple File Formats**
_When evaluating what file formats people may need, it may be important to provide file formats based on de facto standards given commonly used computati…
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Is there interest in storing data in the cloud? E.g. using AWS S3. With HDF5 this is problematic since h5py requires a posix-based filesystem. I maintain the h5pyd project (https://github.com/HDFGr…
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After uploading data and receiving "no errors detected", Preprocessing fails with this error
File "/home/adminuser/venv/lib/python3.9/site-packages/streamlit/runtime/scriptrunner/script_runner.py",…
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Hey! I thought plotting `.var` columns in `sc.pl.violin()` worked previously (and the error message seems to suggest this as well).
I am doing the following:
```
adata_counts.var['dropout_per_gen…
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Hi,
I want to convert h5ad to seurat.
sceasy::convertFormat("scTCR.h5ad", from="anndata", to="seurat",
+ outFile='scTCR.rds')
But I had error:
Error in dimnamesGets(x, …
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Hi,
I just want to ask , can we use CellBender for Single Cell Gene Expression Flex Fixed RNA Profiling (FRP) seq samples to remove backgroud noise / Ambient RNA / empty Droplets because this seq is…
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I'm using anndata to store some facs data. After reading in the files (each file one sample) and storing the values in anndata format, I concatenate all the samples with ```ann.AnnData.concatenate(*an…
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- [x] Karoly
- [x] Upendra
- [x] Lingyun
After a discussion with Pedro the suitable anndata experiment for our local environment is with the accession: `E-ANND-3`.
It can be found here: `/nfs/product…