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This is a sort of meta issue.
Currently, loading ~8000 CpG sites for 420 samples (which translates into ~3.4M data objects and ~20M vertices) takes around four seconds, which ruins the user experie…
tuner updated
9 months ago
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Running the following example produces an error:
`run_examples.sh` (lines 33-39)
```
echo bed
python igv_reports/report.py test/data/variants/variants.bed \
--genome hg38 \
--flanking 1000 \
…
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Hi,
I'm trying to run bam2gam for my own dataset with the following command:
`singularity exec --pwd /home/xxt050/opt/MoMI-G/scripts docker://momigteam/momig-tools:autobuild bash -x bam2gam.sh /ho…
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I think we should follow the numpy documentation and avoid the plain ``import numpy`` form in favour of ``import numpy as np``.
With the current code base:
```
$ cat *.py */*.py */*/*.py | grep…
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Received request from Yue
```
I notice that for in workflow/rules/annotation.smk, def get_bed_s_and_g(wildcards) and def get_bed_all(wildcards) miss the non.stringent and non.relax definition of bed…
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Hello!
I want to display the bedpe file in the form of a straight line instead of an arc, but I can't find the corresponding operation mode, please give me a solution, thank you!
IGV version is 2.12…
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like here's a clustalw output:
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**Describe the bug**
The jbrowse2 BED data parser doesn't seem to work correctly with test BED data file test_data/volvox/volvox-bed12.bed that jbrowse2 is using as an example.
**To Reproduc…
sxd8 updated
9 months ago
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https://mp.weixin.qq.com/s/dfsj0bBmWS0WyBm6Bmt2Ng
ixxmu updated
4 months ago
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Hi @PoisonAlien, thank you for creating this tool!
As my data is derived from mice, and UCSC does not provide a matching mm10 chromHMM bigBED file for my data type, I had to find an alternative so…