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igvteam
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igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
MIT License
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Respect --exclude-flags 0
#121
xunjieli
opened
1 week ago
2
Remove dead code in feature.py
#120
xunjieli
opened
1 week ago
1
Multiple BAM files in --track-config json?
#119
phillip-richmond-alamya
closed
1 month ago
3
Specify attribute file
#118
evsru
opened
2 months ago
1
create_report is not updating the info-columns flag when passing custom names
#117
projassanchez
opened
2 months ago
4
Methylation viewing in igv-reports
#116
phillip-richmond-alamya
closed
1 month ago
9
find defaults to -1
#115
krdav
closed
3 months ago
0
Only display subset of tracks for specific variant rows
#114
ErikEnsminger
closed
3 months ago
2
Very slow to open with large BAM file sizes
#113
yolanda-y-li
closed
4 months ago
1
Add utility to change default zoom
#112
DevangThakkar
closed
3 months ago
6
Change default track height for tracks supplied via --tracks
#109
phillip-richmond-umoja
closed
4 months ago
1
translate-sequence-track option
#108
ak
closed
8 months ago
1
Non ACTG Nucleotides
#107
StephanHolgerD
closed
3 months ago
11
Alignment File Report Possible from "downsamples BAM"
#104
jenzejoe2
closed
9 months ago
2
Could not load local index file 'ncbiRefSeq.txt.gz.tbi'
#103
JunhuiLi1017
closed
9 months ago
1
Error running with BED file
#102
andyjslee
closed
9 months ago
8
Tracks no longer show in html files
#101
lauhinojosa
closed
4 months ago
7
Large structural variants not being fully captured in report tracks
#100
zbonnstetter
closed
11 months ago
4
Retain custom alignment colors from gff3
#99
drdna
closed
11 months ago
2
KeyError: 'txt for input track
#98
MjelleLab
closed
1 year ago
2
Problem with displaying the IDs from a GFF3 file
#96
dlbowie0
closed
1 year ago
0
Non human reference genome
#95
erinyoung
closed
12 months ago
2
libcurl ssl issue
#94
barslmn
closed
11 months ago
2
fasta unrecognized
#93
mzwaig
closed
11 months ago
1
create_report: error: unrecognized arguments: --zero-based false
#92
yunkaig
closed
1 year ago
1
during colsort put missing values at bottom always
#91
brianjohnhaas
closed
1 year ago
1
always put empty column values at the end of the table when sorting by that column asc or desc
#90
brianjohnhaas
closed
1 year ago
0
fix bug in tsv header being retained as data row
#89
jethror1
closed
1 year ago
1
malposition of rows with tab and maf format input
#88
jcd-gh
closed
1 year ago
3
filtering in HTML output?
#87
juntkym
closed
11 months ago
1
How to turn off downsampling option
#86
canna1998
closed
11 months ago
1
Noembed
#85
jrobinso
closed
1 year ago
0
Fusions
#84
jrobinso
closed
1 year ago
0
Handshake failure error when used with Python 3.10
#83
ManavalanG
closed
1 year ago
1
HTML report too large
#82
abridgeland
closed
1 year ago
26
Alignment track whitespace
#81
ryanyord
closed
1 year ago
3
converting the html to pdf
#80
laxvid
closed
1 year ago
3
TypeError: a bytes-like object is required, not 'str'
#79
user-tq
closed
1 year ago
3
Export all tracks to image file
#78
jaredbrewer
closed
11 months ago
1
Add --title to variant html template
#77
juanesarango
closed
1 year ago
1
AttributeError: 'pysam.libcbcf.TabixIterator' object has no attribute 'append'
#76
lindenb
closed
11 months ago
2
Why is variant sites a mandatory input for igv-reports
#75
gopalpeddinti
closed
1 year ago
3
Copy Number Report
#74
osmanwa
closed
1 year ago
3
Add support for wiggle coverage tracks.
#73
sadams2013
closed
1 year ago
11
INFO field parsing
#72
georgiesamaha
closed
1 year ago
3
Change default display mode
#71
RaphaelHablesreiter
closed
1 year ago
1
Consider using CRAM format to reduce file size
#70
jrobinso
closed
4 months ago
1
Filter duplicates
#69
jrobinso
closed
2 years ago
0
Option to filter/hide duplicate reads in igv-reports?
#68
satyakam001
closed
2 years ago
11
Load file from private Google Cloud bucket
#67
DevangThakkar
closed
2 years ago
4
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