issues
search
igvteam
/
igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
MIT License
352
stars
53
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Request overhang softclip sequence view in igv reports
#66
julie-asimov
closed
2 years ago
6
Add support for side-by-side variants/BEDPE format
#65
DevangThakkar
closed
2 years ago
12
Incorrect table headers for BED file variants
#64
DevangThakkar
closed
2 years ago
0
BEDPE support
#63
MJThiecke
closed
2 years ago
1
Suggestion: add examples of output reports
#62
ameintjes
closed
2 years ago
1
Down-sampling
#61
azbard
closed
2 years ago
1
Is it possible to create read coverage density plot
#60
showteeth
closed
2 years ago
1
Error when specifying URL in file for `--track-config`
#59
yeemey
closed
2 years ago
2
Embedded igv-report array length error
#58
azbard
closed
2 years ago
4
igv-reports doesn't display bam but igv does
#57
azbard
closed
2 years ago
6
Added support for BCF files
#56
fgvieira
closed
2 years ago
2
Suggestion: add support for BCF files
#55
fgvieira
closed
2 years ago
2
When the bam file (200 Mb) is big, it failed to load
#54
XuewenWangUGA
closed
3 years ago
4
Input/output error when creating IGV report
#53
fgvieira
closed
3 years ago
7
Add IGV 'side-by-side' feature please.
#52
xiucz
closed
2 years ago
5
ValueError: start out of range (-261)
#51
ctuni
closed
3 years ago
12
support for .tsv or .maf format input files
#50
stevekm
closed
3 years ago
5
Need an error message if the wrong reference genome is being used
#49
stevekm
closed
3 years ago
5
need ability to freeze column headers in HTML table
#48
stevekm
closed
3 years ago
3
fix for integer Info columns not in latest release on pip
#47
stevekm
closed
3 years ago
1
HTML report not generated if variant location does not exist (was HTML report does not work with hg19.fasta)
#46
stevekm
closed
3 years ago
3
Not able to find reference on s3.amazon
#45
DanielAndreasen
closed
3 years ago
21
enforce min bound on flanked region; skip empty gff3 lines
#44
tomkinsc
closed
3 years ago
1
Issues printing multiple INFO columns
#43
IvantheDugtrio
closed
3 years ago
9
avoid TypeError: NoneType object is not iterable
#42
brianjohnhaas
closed
4 years ago
0
allow for None type in annotations involving multiple allelic variant…
#41
brianjohnhaas
closed
4 years ago
1
allow for None type when encountering multi-allelic sites
#40
brianjohnhaas
closed
4 years ago
0
initialization configuration questions
#39
ghost
closed
2 years ago
3
Request: New Release
#37
FelixMoelder
closed
5 years ago
1
css inline parsing and removal of linkouts
#36
FelixMoelder
closed
5 years ago
1
Info-field parsing based on field prefix
#35
FelixMoelder
closed
5 years ago
1
Improved annotation field parsing
#34
FelixMoelder
closed
5 years ago
6
bugfix: standalone js-parsing
#33
FelixMoelder
closed
5 years ago
4
Bugfix decoding annotation field
#32
FelixMoelder
closed
5 years ago
0
Mistake in latest release number
#31
FelixMoelder
closed
5 years ago
7
igv-report does not embed igv track
#30
alperyilmaz
closed
5 years ago
5
fix typo in sample code
#29
alperyilmaz
closed
5 years ago
1
Warning: The index file is older than the data file
#28
MarkleLab
closed
5 years ago
14
varianttable.py: add feature ID and nucleotide modification code to ANN format field printed entries
#27
dlaehnemann
closed
5 years ago
7
varianttable.py: correct INFO and FORMAT field rendering for single Float or Integer entries
#26
dlaehnemann
closed
5 years ago
2
Sorting option
#25
binfyun
closed
5 years ago
8
High coverage BAMs needs to be downsampled in order to show reads
#24
binfyun
closed
5 years ago
2
BAM files size limitation
#23
binfyun
closed
5 years ago
15
Add support for sample columns
#22
johanneskoester
closed
5 years ago
7
Not all reads displayed
#21
johanneskoester
closed
5 years ago
2
Table fixes and improvements
#20
johanneskoester
closed
5 years ago
1
fixed typo pythong -> python
#19
wdecoster
closed
5 years ago
0
Present ANN field in a visual way
#18
johanneskoester
closed
3 years ago
2
Display ID column in table
#17
johanneskoester
closed
2 years ago
1
Allow selecting fields from the sample columns.
#16
johanneskoester
closed
2 years ago
5
Previous
Next