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Hello K2SOHIGH,
I truly love your software, it's an amazing piece of tech.
Yet when I have installed it through conda, I had 2 bugs. When I compare the codes between the one on github and the one…
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The read_phyloseq, read_biom2phyloseq etc useq datasets from QIITA and DynamicsIBD. We had to remove these data sets from the package due to Bioc constraints for package size (4Mb). I have commented o…
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I run:
```
autoreconf -i --force
./configure CFLAGS="-DBIG_SECURITY_HOLE" CXXFLAGS="-DBIG_SECURITY_HOLE" LDFLAGS="-lpthread -ldl -lz -static" --prefix=/opt/trafficserver-8.1.0
make V=1
```
T…
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I'm using .biom files made in mothur, and I used the work around:
sed 's#null#{}#g' file_name.biom > file_name.unique.biom
to get phinch to take the file, but when I go to actually play with the data …
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I am hoping to resolve what could be a simple issue.
I am processing Miseq data with mothur. I want to port a .shared file over to shiny-ps.
I created a .biom file using the .shared and .consta…
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I installed `v0.1.0` via the following:
```
conda install -c conda-forge biom-format patsy xarray arviz cmdstanpy
pip install birdman
```
When I try to run a negative binomial model, I get t…
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General functionality:
- [ ] Copy input files to output directory and link from `index.html`. This will make the output folder really comprehensive in terms of data delivery. Include an option to over…
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If a read can be equally assigned to more than one gene, the mapper does not currently resolve ties. In the code:
def _process_raw_output(self,
raw_output_fp,
…
cleme updated
10 years ago
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Hi guys,
congratulations for the Nature methods paper on this.
I have a couple of suggestions:
- support running the tool from more standard input files rather than .biom (.csv, .tab. etc.), t…