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---
id: vcell
version: 7.5.0.80
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.5.0.80/biosimulators.json
specificationsPatch:
version: 7.5.0.80
image:
url: ghcr.io…
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The omex files in the attached zip raise errors in the Biosimulators Teste Suite, and after inspecting a few of them, the output does not match the expected ouput, as reflected in the HDF5 file (which…
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##Background
We submit a containerized version of VCell to the Biosimulators site for use in projects such as Henry Jakubowski's textbook. Our submissions are validated by a Biosimulator's Test Suite…
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### Background
- VCell supports model changes as specified in the sedml file of a provided archive per the standard.
- The BioSimulators Test Suite (BSTS) contains some tests to make sure illegal mo…
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### Background
- When running the BioSimulators Test Suite (BSTS), some tests earn a "skipped" result, which can hide failures that the testing system didn't identify properly
- Ion identified a num…
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A series of runtime errors occur when attempting to run the attached omex file (renamed to zip for GitHub reasons):
[Elowitz-Nature-2000-Repressilator.zip](https://github.com/virtualcell/vcell/files…
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The attached OMEX files all produce different results on copasi-on-biosimulations than they do for copasi-on-my-desktop (or, for that matter, from tellurium-on-biosimulations).
[BIOMD0000000005.o…
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Once everything is put together, we should do an overnight run of the Regression testing setup to find any final bugs that happen because of integration.
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## What needs to happen?
We added support for jagged lists to simulariumio https://github.com/simularium/simulariumio/issues/63, it would be nice to use it now in the `SimulariumEmitter`.
## Why s…
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## Use Case
As a developer working on octopus live mode, I want a simple model of 4 particles diffusing randomly in ReaDDy that I can use to test state updates.
## Acceptance Criteria
A process t…