-
The spec of [`LoadListingEnum`](https://www.commonwl.org/v1.2/Workflow.html#LoadListingEnum) used in [`LoadListingRequirement`](https://www.commonwl.org/v1.2/Workflow.html#LoadListingRequirement) says…
-
Hi all,
First off, thanks for all the hard work to get CWL up to where it is today. I'm pretty excited to see where it goes.
I'm currently working on a project at OHSU where we're wanting to use CWL…
-
Slightly modifying the `array-outputs.cwl` example, we get:
```
cwlVersion: v1.0
class: CommandLineTool
baseCommand: touch
inputs:
touchfiles:
type:
type: array
items: strin…
-
### Submission Type
- [x] simple
- [ ] advanced (Workflow RO crate - skip question about problem location)
### Problem(s) Occurred In:
- [x] Workflow
- [ ] Abstract CWL
- [ ] Diagram
### W…
-
(I commented also [here](https://github.com/common-workflow-language/workflows/commit/84bfbb782d39f1e54c1f6d293d9dd9541468dbd0#commitcomment-17349629) about this.)
This is relevant to the Picard sub-…
-
It is available since CWL v1.0 but its usecase can be covered with [`CommandInputParameter#inputBinding`](https://www.commonwl.org/v1.2/CommandLineTool.html#CommandInputParameter) and [`CommandInputRe…
-
While the CWL project can be [cited by DOI](https://doi.org/10.6084/m9.figshare.3115156.v2), many CWL community members have requested that there be a traditional academic publication in a peer review…
-
- [ ] need to update all portal files to include data for all new DMP samples included in output
- [x] need to output "shareable" maf (current output), and "portal" output that has comments removed
…
-
http://www.commonwl.org/user_guide/05-stdout/index.html
The example shows how to capture stdout for a single tool to be output.txt. This example should also show how to rename the output file, or …
-
As discussed in the CWL conference call today, 28 April 2015, now it is probably a good time to exemplify the case of using an existing bioboxes container and run it within CWL.
For example, https://…