bioboxes rfc issues - Githubissues

bioboxes / rfc

Request for comments on interchangeable bioinformatics containers

http://bioboxes.org

MIT License

40 stars 9 forks source link

issues

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Error when following the example biobox usage

#218 andre-geldenhuis opened 6 years ago
0
Command line interface (CLI) isn't found after installation

#217 transcript closed 6 years ago
1
Multi-sample specification extension

#216 fungs closed 5 years ago
4
feat(unsupervised-binning): initial unsupervised-binning-spec

#215 pbelmann closed 7 years ago
0
Update my mail address

#214 abremges closed 7 years ago
0
Aid users by printing citation info

#213 abremges opened 7 years ago
9
Improved versioning

#212 abremges opened 7 years ago
11
feature(profiling-evaluation): upgrade profiling evaluation to 1.0.0

#211 pbelmann opened 7 years ago
1
updated profiling interface see

#210 pbelmann closed 7 years ago
0
Tutorial for using profiling Bioboxes.

#209 pbelmann opened 7 years ago
0
Command Line Interface should have a run command for Profiling tools

#208 pbelmann opened 7 years ago
0
Define a new format for the biobox.yaml input data

#207 michaelbarton opened 7 years ago
7
Update existing assembly evaluation images with new metrics file output

#206 michaelbarton opened 7 years ago
0
The bioboxes validator task should ensure a metric TSV file is generated

#205 michaelbarton opened 7 years ago
6
Make a TSV output file mandatory as part of the RFC for the assembly evaluation task

#204 michaelbarton opened 7 years ago
0
Update bioboxes website for new list of biobox images.

#203 michaelbarton closed 7 years ago
1
Integrate biobox images listed in nucleotides in the new biobox list format

#202 michaelbarton opened 7 years ago
0
upgraded profiling inteface

#201 pbelmann closed 7 years ago
0
Definine a new data format for listing images with the SHA256 digest

#200 michaelbarton closed 7 years ago
6
Fix current build issue in bioboxes.org website

#199 michaelbarton closed 7 years ago
1
Need to define a license for all the code and bioboxes we are creating.

#198 michaelbarton closed 6 years ago
7
Need to emphasize input requirements

#197 fernandomeyer opened 7 years ago
2
Interface for read mappers?

#196 sdwfrost closed 7 years ago
2
GAEMR Assembly Evaluation Biobox

#195 pbelmann opened 8 years ago
0
Suggested changes to the assembly validator input interface

#194 michaelbarton closed 8 years ago
7
Bioboxes python interface library.

#193 michaelbarton opened 8 years ago
0
Genome assembly recipe does not work

#192 michaelbarton opened 8 years ago
2
Profiling Interface

#191 pbelmann closed 7 years ago
1
bioboxes/megahit should fail with error message if the number of CPUs is less than 2.

#190 tomsitter closed 7 years ago
14
profiling evaluation interface

#189 pbelmann closed 8 years ago
0
Profiling Evaluation RFC

#188 pbelmann closed 8 years ago
2
Suggested changes to the assembly validator output interface

#187 michaelbarton closed 7 years ago
6
Bioboxes CLI does not work on OSX

#186 michaelbarton opened 9 years ago
7
read based assembly evaluation

#185 pbelmann closed 9 years ago
0
What bioboxes functions should be demonstrated at the simultaneous talks on November 9th?

#184 michaelbarton closed 9 years ago
6
Read based Assembly Evaluation

#183 pbelmann closed 9 years ago
9
Should a metrics file be specified by the assembly validator RFC?

#182 michaelbarton closed 7 years ago
3
The website should have documentation on how to use the command line interface.

#181 michaelbarton closed 9 years ago
1
Create template biobox repository

#180 fungs closed 9 years ago
1
Create bbx-base DockerHub trigger

#179 fungs closed 9 years ago
8
Biweekly review meeting - Thu 27 Aug 2015 16:00 UTC

#178 michaelbarton closed 9 years ago
2
Create velvet-optimiser assembler image

#177 michaelbarton opened 9 years ago
0
Create squeezambler assembler image

#176 michaelbarton opened 9 years ago
0
Create meraculous assembler biobox

#175 michaelbarton opened 9 years ago
0
Create spades biobox

#174 michaelbarton closed 7 years ago
2
Assing BioInterchange Docker image

#173 KimJBaran closed 9 years ago
1
Update rfc.mkd

#172 MarkUgarov closed 9 years ago
0
Biweekly review meeting - Thu 30 Jul 2015 15:00 UTC

#171 michaelbarton closed 9 years ago
5
too much emphasis on genomics

#170 prvst closed 9 years ago
2
Migrate biobox base image

#169 fungs closed 9 years ago
1