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mskcc
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pluto-cwl
CWL workflows for helix filter scripts
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Fix for handling handle empty vcf and maf
#122
nikhil
closed
12 months ago
0
Feature/handle empty maf to vcf
#121
nikhil
closed
1 year ago
0
Feature/fix facets run
#120
nikhil
closed
1 year ago
0
put report in its own dir
#119
svural
opened
1 year ago
0
Updated SV data and meta file names
#118
nikhil
closed
1 year ago
0
Added portal sv files to workflow output
#117
nikhil
closed
1 year ago
0
fillout maf needs to use updated MafWriter to ensure Amino_Acid_Change column is present
#116
stevekm
closed
1 year ago
2
Fingerprint
#115
svural
opened
1 year ago
1
Need to add `id` and `label` fields to all CWL's and tools
#114
stevekm
opened
1 year ago
0
Fix Jenkins recipe
#113
stevekm
opened
1 year ago
0
fix Pluto serializer script for pairs
#112
stevekm
opened
1 year ago
0
add TMB maf output
#111
stevekm
closed
1 month ago
0
add CMO PORTAL MUTS to data clinical sample
#110
stevekm
opened
1 year ago
0
add CMO ASSAY COVERAGE to data clinical sample
#109
stevekm
opened
1 year ago
0
add CMO ASSAY label to data clinical sample
#108
stevekm
opened
1 year ago
0
Dev
#107
stevekm
closed
1 year ago
0
High temp storage usage with samples_fillout_index_batch_workflow.cwl
#106
stevekm
opened
1 year ago
1
add PNG to facets-wrapper cwl output
#105
stevekm
closed
1 year ago
1
Feature/seperate out msi and tmb steps
#104
stevekm
closed
1 year ago
3
update & refactor test cases
#103
stevekm
closed
2 years ago
1
Added sv portal output
#102
nikhil
closed
2 years ago
2
fix duplicate file output in portal workflow
#101
stevekm
closed
2 years ago
2
Add unfiltered output for germline filter
#100
stevekm
closed
2 years ago
0
Dev
#99
stevekm
closed
2 years ago
0
Germline filter
#98
stevekm
closed
2 years ago
0
Feature/facets refactor
#97
nikhil
closed
2 years ago
1
Feature/facets refactor
#96
nikhil
closed
2 years ago
0
Add Normal sample ID's to the fillout workflows
#95
stevekm
closed
2 years ago
4
consolidate Python fixtures
#94
stevekm
opened
2 years ago
3
Switch pluto url
#93
nikhil
closed
2 years ago
0
Update test cases for Jenkins
#92
stevekm
closed
1 year ago
3
fix ultron test case
#91
stevekm
closed
2 years ago
0
Ultron re-merge
#90
stevekm
closed
2 years ago
0
Ultron re-merge
#89
stevekm
closed
2 years ago
0
update tests
#88
nikhil
closed
2 years ago
6
Release 21.7.0
#87
nikhil
closed
2 years ago
3
Ultron
#86
allanbolipata
closed
2 years ago
0
Workflow wo facets update
#85
stevekm
opened
2 years ago
2
need to update samples fillout workflow output
#84
stevekm
opened
2 years ago
4
Updated pluto repo path
#83
nikhil
closed
2 years ago
13
Empty commit to test jenkins
#82
nikhil
closed
2 years ago
7
Ultron
#81
allanbolipata
closed
2 years ago
1
Update test suite for integration testing
#80
stevekm
closed
2 years ago
2
need to output per-sample portal maf files
#79
stevekm
closed
2 years ago
2
clean up env.sh
#78
stevekm
closed
2 years ago
1
deprecate run.py script
#77
stevekm
closed
2 years ago
1
Test doublemem fix
#76
stevekm
closed
2 years ago
1
update test cases for igv report maf workflow
#75
stevekm
opened
2 years ago
0
Updated toil installation step
#74
nikhil
closed
2 years ago
0
refactor samples_fillout_workflow to use scatter at getbasecountsmultisample step
#73
stevekm
closed
2 years ago
1
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