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Hello,
I am using LinkedSV on 10X Genomics linked-reads sequencing generated bam file with following command:
python linkedsv.py -i phased_possorted_bam.bam -d . -r hg38.fa -v hg38 -t 20 --germlin…
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Hi, Dr Li.
I installed transflow on ubantu 22.04 using mamba. When i ran transflow.sh, i got error as follows. Could you help me to solve this problem? Thanks !
(transflow) plf@plf-linux:~/transfl…
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Hi !
I am running this script in a HPC:
#!/bin/bash
module load apptainer/1.1.4
SOUPORCELL_DIR=/mypath/test
BATCH=${1}
SAMPLE=$(echo "$BATCH" | cut -d"_" -f1)
REF_DIR=/tmp/souporcell/re…
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How is a classification problem, as discussed in the data mining paper, different from a clustering problem?
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Hi Satria,
Thanks for the great package. I'm having difficulty clustering gbks from MIBiG.
I made an input folder, downloaded MIBiG, and placed the gbks in the input folder.
```
mkdir -p bigsl…
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Hi,
Thank you for developing such a really great method and very cool study tool!
I was able to run SMEG through singularity installation and changed download_genomes.sh line 4 to "wget ftp://ftp.…
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Good day,
I get this error when trying to run the pipeline on the example fastqs (I get the same error on my own fastqs as well):
"(transflow) [jloubser@khaos transflow]$ bash transflow.sh --conf…
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I would like to be able to run cascaded clustering with explicitly defined sensitivity levels, and also disable the first Linclust step. Can this be done somehow?
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Mechanistic discussion of gene regulation using cell-type and multi-omic info
Think about modality relationships, segregation using cell-type as features
## DNA methylation
- Classification of …
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Hey!
I am trying to run VirClust standalone, but I am getting the following error message:
VirClust called with projdir=/virclust/virclust_scripts/out infile=/virclust/virclust_scripts/in/test.f…