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```
$ /usr/local/mob-suite/3.0.3/bin/mob_recon --infile skesa/SRR7653407 --outdir SRR7653407.mob_recon -n 16 --database_directory /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/home/brovervv/PD-plasmid/m…
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Running PGAP on a SPADES-assembled bacterial genome using my HPC (local option is an M1 MacBook, but it seems to not be supported). I ran the MG37 test successfully with no warnings or errors.
To e…
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Hi there. First off, thanks for this great implementation of GPipe for PyTorch, it is very much appreciated. I am looking forward to getting it running for a research project I am working on, however,…
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**Describe the bug**
I don't know actual problem. I ran for sometime and then just no result. i have attach the log file
[cwltool.log](https://github.com/ncbi/pgap/files/7930888/cwltool.log)
**To…
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**Describe the bug**
I could run PGAP with mg37 genome successfully but it fails with a few other examples and with my data.
**To Reproduce**
PGAP runs fine with mg37 but fails with my genome an…
ss-91 updated
2 years ago
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https://arxiv.org/pdf/2007.01045.pdf
啊这. 才发现有老板名字.
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This issue is to track all the failing tests and progress towards fixing them.
All the following tests need to be disabled from run_test.py for it to run to completion.
Note that some failures mig…
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First, thank you all for making fragpipe available to the community.
Since we rely on batch systems on our HPC clusters, it is hard for our users
to every time run fragpipe interactively by running…
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Thank for sharing this project and paper
I'm using GPipe Pytorch to testing inference time the same test dataset and compare with running on single GPU as baseline.
1/ The inference time running wit…
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We are experiencing failures using Toil to run our CWL workflow, and suspect a bug in Toil's handling of Directory inputs. The symptom is an error message, "File is missing: /the/path/to/some/file" (n…