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phac-nml
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mob-suite
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Apache License 2.0
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MOB_recon classification of plasmid & chromosome
#175
mdtorohernando
opened
3 weeks ago
0
Understanding no secondary cluster in output reports
#174
cizydorczyk
opened
4 weeks ago
0
Runs with test data do not result in hits - apparently error loading shared libraries
#173
pdy1084
opened
4 weeks ago
0
Import Error
#172
KeCo26
closed
1 month ago
1
Several hundred plasmids relaxase typed as 'MOBP' are now typed as '-'
#171
eri-lim
closed
1 week ago
3
Relaxase database of MOB-typer: several truncated proteins and a transposase
#170
Phytobacteriology-UPNA
opened
3 months ago
3
I cannot install MOBsuite to my environment
#169
zeineppu97
closed
1 month ago
10
Something went wrong with database download or unpackingCheck MOB-Suite databases directory and your Internet connection
#168
kenken86
closed
1 month ago
1
Database not installed properly
#167
Santhi17
opened
5 months ago
1
towards release 3.1.9 and issue fixes #160 and #163
#166
kbessonov1984
closed
5 months ago
0
Cannot find mob-typer accessions on NCBI
#165
Rikkiff
opened
5 months ago
4
fixed contig order issue #160 and biopython issue #134 and #163 fixed…
#164
kbessonov1984
closed
5 months ago
0
Installation problem from conda
#163
bvalot
closed
5 months ago
7
TypeError: hostrange() missing 1 required positional argument: 'database_directory'
#162
Longyulin22
closed
6 months ago
1
mob_init fails
#161
renrok
closed
7 months ago
1
Results depend on the ordering of the input fasta
#160
jchorl
closed
5 months ago
1
stably sort contig link counts
#159
jchorl
opened
7 months ago
1
mob_recon does not reconstruct plasmids sequences
#158
maricleon
closed
6 months ago
1
A circular contig with replicons from a hybrid assembly is classified as a chromosome
#157
valery-shap
opened
10 months ago
0
Command line to run batch of samples in mob_recon
#156
Firdoos071
opened
10 months ago
0
mob_recon's error: "TypeError: to_csv() got an unexpected keyword argument 'line_terminator'"
#155
wanyuac
closed
11 months ago
5
Pandas version issue when installing using conda/mamba
#154
tianrenmaogithub
closed
11 months ago
2
Mob_Recon fails with compressed input
#153
jvfe
opened
1 year ago
1
MOB-recon v3.1.7 fails at the biomarker stage.
#152
ejurga
closed
11 months ago
3
Feature request: Support `circular=Y` for detecting circularized contigs
#151
dfornika
opened
1 year ago
0
mob_typer -d with not-yet-initialized db path fails
#150
phyden
closed
1 year ago
3
fix hostrange() missing 1 required positional argument: 'database_directory'
#149
rpetit3
closed
1 year ago
3
hostrange() missing 1 required positional argument: 'database_directory'
#148
rpetit3
closed
1 year ago
1
Add missing comma to entry_points
#147
mencian
closed
1 year ago
2
Feature suggestion: Confirm plasmids from assembly graphs
#146
davidtong28
opened
1 year ago
0
Coverage threshold not applied for tblastn searches
#145
CorinYeatsCGPS
closed
1 year ago
2
[Question] Could MOB-suite be used in metagenomics data
#144
llk578496
closed
1 year ago
1
Conda instalation fails
#143
andreaniml
closed
1 year ago
3
Add missing args to initETE3Database
#142
dfornika
closed
1 year ago
0
Error in mob_cluster `NamesToTaxIDs`
#141
dfornika
closed
1 year ago
0
runerror
#140
17863952296
closed
1 year ago
1
Error for mob_typer: No BLASTN results to parse from file
#139
avonm
closed
1 year ago
1
RuntimeError: Cannot cythonize without Cython installed.
#138
Xian220
closed
1 year ago
2
KeyError line 532 in mob_cluster.py
#137
awh082834
closed
1 year ago
5
conda installation error
#136
Khabibullin543
closed
1 year ago
2
Smaller number of plasmids and how to build a new database
#135
Dx-wmc
closed
1 year ago
1
Minimum Biopython version?
#134
cmfield
closed
1 year ago
2
mob_typer --multi Running error？
#133
Dx-wmc
closed
1 year ago
1
NamesToTaxIDs() missing 1 required positional argument: 'ETE3DBTAXAFILE'
#132
k-krakowski
closed
1 year ago
4
Question: mob_recon with custom db classifying contigs as chromosome vs novel clusters
#131
lerminin
closed
1 year ago
2
mob_typer running error?
#130
sekhwal
closed
1 year ago
1
No alias or index file found for nucleotide database `ERROR`
#129
juliofdiaz
closed
1 year ago
3
UnboundLocalError: local variable 'ETE3DBTAXAFILE' referenced before assignment
#128
gchalmer
closed
1 year ago
3
MOB-Recon not generating reports - Error in
#127
andscoaafc
closed
1 year ago
6
False plasmid found in the plasmid reference database
#126
davidtong28
closed
1 year ago
5
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