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phac-nml
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mob-suite
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Apache License 2.0
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failed installation of mob_suite 3.1.0 in conda
#125
gilmahu
closed
1 year ago
2
Input fasta file
#124
Wendy361
closed
1 year ago
1
module 'numpy' has no attribute 'bool'
#123
yqy6611
closed
1 year ago
2
same primary_cluster_id but different mash_nearest_neighbour?
#122
karynkomatsu
closed
1 year ago
1
How to specify database directory
#121
Abelcanc3rhack3r
closed
1 year ago
5
How to specify -p and -t arguments in mob cluster without any information
#120
Abelcanc3rhack3r
closed
1 year ago
5
Error Installing mob suite from conda
#119
Abelcanc3rhack3r
closed
1 year ago
3
A problem with initializing databases - code 255
#118
blooria
closed
1 year ago
3
cpu count versus available cpus
#117
EricDeveaud
closed
1 year ago
1
pip install failing
#116
nick-youngblut
closed
2 years ago
1
No such file or directory: mge.blast.results.txt
#115
nick-youngblut
closed
1 year ago
4
mob_recon: output directory must exist
#114
nick-youngblut
closed
1 year ago
1
how to get the fasta file for each rep_cluster that annotated froim mob_typer
#113
Wanli-HE
closed
2 years ago
1
Not clear how to make a custom DB
#112
iowa69
opened
2 years ago
3
handle missing blast results file
#111
jchorl
closed
1 year ago
0
Mash sketching failing silently with conda installation
#110
nataquinones
closed
1 year ago
2
Clarify license to Apache 2.0.
#109
cbrueffer
closed
2 years ago
2
Recommendation on running MOB-recon on ~700k assemblies
#108
leoisl
closed
2 years ago
1
Missing Blast database
#107
cchauve
closed
2 years ago
9
Circlator
#106
cchauve
closed
2 years ago
5
Bug: `--database_directory` not working in `mob_recon`
#105
schorlton
closed
1 year ago
5
Enhancement: Don't fix threads to 1?
#104
schorlton
closed
2 years ago
1
mob_cluster: "pandas.errors.ParserError: Too many columns specified: expected 26 and found 24"
#103
cwillian1
closed
2 years ago
2
Docker Image Size
#102
pbelmann
closed
2 years ago
4
Maximum Contig Size for MOB-recon?
#101
schorlton
closed
2 years ago
3
Is --run_typer ignored in mob_recon?
#100
rpetit3
closed
2 years ago
2
contig_id in any of the files cannot be mapped back to original FASTA
#99
schorlton
opened
2 years ago
6
mob init: File not found on server
#98
nick-youngblut
closed
2 years ago
1
Install from bioconda but use local database?
#97
schorlton
closed
2 years ago
11
Slow running
#96
zhichusun
closed
2 years ago
1
can't download the database
#95
shaodongyan
closed
2 years ago
3
conda installation error
#94
Anto007
closed
2 years ago
3
Lock file is created in /usr/local/ though the database is in a different directory
#93
vbrover
closed
2 years ago
3
mob_typer: --analysis_dir
#92
nick-youngblut
closed
2 years ago
1
param defaults in script docs
#91
nick-youngblut
closed
2 years ago
1
How can I get the position of each gene in the plasmid
#90
xdli009
closed
2 years ago
1
Mob 3.0.3
#89
kbessonov1984
closed
3 years ago
3
mob_init does not work because of a file sharing issue
#88
aldertzomer
closed
2 years ago
1
MOB-typer failed to detect plasmid replicons and relaxases for fasta files with certain headers.
#87
ryotag
closed
2 years ago
1
ERROR: Something went wrong with database download or unpackingCheck MOB-Suite databases directory and your Internet connection
#86
danielapfh
closed
3 years ago
1
Mob-typer returns different results when plasmids were rotated.
#85
ryotag
closed
2 years ago
3
Fix duplicate out_dir in update_fasta
#84
dfornika
closed
3 years ago
4
Question Regarding Mob-recon
#83
YasirKusay
closed
3 years ago
4
ETE3_db_status_check trying to write to default database_directory with database_directory specified
#82
shuzvvn
closed
3 years ago
7
mob_cluster: Duplicated path during copy of 'references_updated.fasta' file
#81
dfornika
closed
3 years ago
0
output result files to running directory
#80
hkaspersen
closed
3 years ago
2
-s option does not change output file names
#79
hkaspersen
closed
2 years ago
4
is pyqt still a required dependency ?
#78
EricDeveaud
closed
2 years ago
2
Adding plasmid sequences error
#77
pavlo888
closed
3 years ago
1
Error on ETE3
#76
happykhan
closed
3 years ago
2
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