phac-nml mob-suite issues

phac-nml / mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

Apache License 2.0

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issues

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citation?

#75 happykhan closed 3 years ago
1
guidance for downloading the database

#74 happykhan closed 2 years ago
3
Mob 3.0.1 new release

#73 kbessonov1984 closed 4 years ago
0
predicted_host_range_overall_name order

#72 haruosuz closed 2 years ago
6
Mash Dists wihtin and between clusters

#71 Lneffe closed 4 years ago
1
Error when installing from Conda (pandas issue)

#70 jpaganini closed 4 years ago
2
Question for the "--genome_filter_db_prefix (-g)" flag

#69 iaposto closed 3 years ago
3
Multithreading

#68 ilyavs closed 3 years ago
2
The plasmid replicon database of MOB-typer

#67 suzukimicro closed 4 years ago
2
from pandas.io.common import EmptyDataError

#66 kbessonov1984 closed 4 years ago
1
ValueError: 1 taxid not found

#65 bioprojects closed 4 years ago
4
Updated pandas Exception code import in /blast/__init__.py to make pa…

#64 kbessonov1984 closed 4 years ago
1
Error in installing mob_suite-3.0.0 (either by conda or pip3) - pandas EmptyDataError issue

#63 bioprojects closed 3 years ago
9
Updating replicon database

#62 iaposto closed 4 years ago
2
Installation in Galaxy failed

#61 PHemarajata closed 4 years ago
8
plasmid sequence categorized as chromosome

#60 hkaspersen closed 4 years ago
10
ERROR: Mob_typer return code 1

#59 eam12 closed 4 years ago
2
Mob 3.0.0

#58 jrober84 closed 4 years ago
0
removed requirement for both relaxase and replicon to be present in circular sequences

#57 jrober84 closed 4 years ago
0
fixed issue with mismatched mash sketch and clusters.txt

#56 jrober84 closed 4 years ago
0
fixed issue with mismatched mash sketch and clusters.txt

#55 jrober84 closed 4 years ago
0
fixed missing cluster assignment

#54 jrober84 closed 4 years ago
0
using own mob_cluster db error

#53 Lneffe closed 4 years ago
10
Mob 3.0.0

#52 jrober84 closed 4 years ago
0
mob_cluster own db matrix problem

#51 Lneffe closed 4 years ago
10
Output mash tree or equivalent?

#50 flashton2003 opened 4 years ago
4
run-typer not working

#49 Batstaph closed 4 years ago
1
default cut-offs for mob_typer

#48 jnesme closed 4 years ago
2
i have a issure regarding setup.py

#47 sanakousar00 closed 4 years ago
2
Multiple Mob_recon cannot run in concurrently.

#46 Takadonet closed 4 years ago
3
Add sample label to outputs from MOB-typer and MOB-recon

#45 jrober84 closed 4 years ago
1
Is there a way to process multiple unrelated plasmids automatically with mob-typer in the program?

#44 Metaxo closed 4 years ago
8
Mobrecon revamp

#43 jrober84 closed 4 years ago
1
Corrected version formating, stripped non-ascii characters from input…

#42 jrober84 closed 5 years ago
0
MOB-host range module error in mean transfer rate

#41 jrober84 closed 4 years ago
1
setup.py missing "Programming Language :: Python :: 3.7 "

#40 tseemann closed 5 years ago
1
python call :: use sys.executable instead of python

#39 EricDeveaud closed 5 years ago
1
taxadump location ?

#38 EricDeveaud closed 4 years ago
9
String encoding

#37 jrober84 closed 5 years ago
2
Fix issues with character encoding in non-UTF-8 environments

#36 jrober84 closed 4 years ago
5
Add --version switch to all tools

#35 tseemann closed 4 years ago
8
mob_init: ImportError: No module named ete3

#34 tseemann closed 5 years ago
5
On some systems pycurl library might not install correctly via pip

#33 kbessonov1984 closed 5 years ago
0
2.0.0 FileNotFound: lib/python3.7/site-packages/mob_suite/config.json

#32 tseemann closed 5 years ago
6
Host range overall call

#31 jrober84 closed 4 years ago
1
Decouple identification from reconstruction databases

#30 jrober84 closed 4 years ago
1
MOB-init should initialize the NCBI taxonomy databases

#29 jrober84 closed 5 years ago
1
mob-suite :: ete3 import TreeStyle error

#28 EricDeveaud closed 5 years ago
5
append() got an unexpected keyword argument 'sort'

#27 jnesme closed 5 years ago
2
galaxy - irida

#26 happykhan closed 3 years ago
4

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