-
I've followed previous advice of running the single trait MTAG to work out the factor that the MTAG beta's and SE's need to be multiplied by to compare to the GWAS results.
The mean factor (MTAG_beta…
-
Hi
Just wondering about the format for the input snp_list? I have SNPs from a fine-mapping project that I'd like to test. Neither a 3 column, a 4 column BED file, with or without a header line see…
-
Hello,
I'm having trouble interpreting the results of MTag. I don't know how to utilize these results to identify shared SNPs between phenotypes.could you help me please!
zhanya
-
I applied MTAG https://github.com/omeed-maghzian/mtag for some public data:http://csg.sph.umich.edu//abecasis/public/lipids2013/. I choose Total Cholesterol and Triglycerides data to test MTAG.
Whe…
umcyh updated
6 years ago
-
-
Hi，
When I use the function “MRlap”，there is always a problem：
Error in tidy_inputGWAS(exposure, need_chrpos, verbose) : 'HeaderGWAS' not found
OR
Error in h (simpleError (msg, call)):
An error o…
-
Hi,
Thank you for developing this tool.
I am using the local genetic correlation section of the tool (rho-HESS) and have a question regarding accounting for phenotypic correlation which is require…
-
Hi, congratulation on the great work! I would like to know whether it is possible to apply SUSIE-inf on individual data, since the original SUSIE has both individual and summary version avaliable. Wou…
-
@changebio moving our slack discussions here.
## Objective
It is non-trivial to handle all these data merger and region extraction etc for integrative analysis. I would like to revisit and exte…
-
Hi ,
I'm the creator of the MungeSumstats Bioconductor package in which we use VariantAnnotation::writeVcf as an output options for the formatted sumstats. I want to align the formatting of our sum…