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Hi, I want to use syri to detect SVs and I do some experiment to test the accuracy of the Software . When test INS and DEL , it works wonderful ,but when test inversion , I some problems , maybe here …
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Hello,
I was running remora dataset prepare and noticed that my number of chunks was much smaller than expected. I looked at the output file and realized that the extraction procedure appeared to s…
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./squeakr-count -f -k 28 -s 20 -t 1 -o ./ S008_20180206001-8_ffpedna_pan-cancer-v1_5717_S8_R2_001.fq
Reading from the fastq file and inserting in the QF
Segmentation fault (core dumped)
head -8 …
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### Contact Details
liye466493@gmail.com
### What happened?
A bug happened!
When I used: streme -notrim -verbosity 1 -oc . -p pos.fa -n neg.fa -pvt 0.01 -minw 6 -maxw 7
I got the error: streme: u…
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We got back 150 bp read data from NovoGene from the SATAY experiments. Based on a manual inspection of the data, we see that:
- Each read also contains the sequence of the primers used for amplific…
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Hi there,
I am having trouble getting some of the dependencies installed so I thought I'd try to use your container. Do you have your dockerfile pre-built and posted somewhere? When I search do…
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I can't figure out what needs to be set, what the implication of `Use Pre-built DB` is, why do I need to select a kraken db, what happens if I set an optional Database Name, what the implications of K…
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Hello, I am currently testing JAFFAL and other long-read fusion finding tools on a simulated dataset ~generated using badread to simulate reads and FUSIM to simulate fusions (including tri-fusions).
…
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2014-09-20 I disabled the multiplexer since it seems to cause memory usage issues
2014-09-21 I fixed the huge leak in multiplexer.
2014-09-22 fixed leak of inbound buffers
Jobs:
~~soil-690-512x16-3~…
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I have a question of how to evaluate the result of the example. I read your paper, but don't know how to find those FN things. Could you elaborate me more?