schneebergerlab syri issues

schneebergerlab / syri

Synteny and Rearrangement Identifier

https://schneebergerlab.github.io/syri/

MIT License

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issues

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Questions about 'NOTAL'

#257 ChuanzhengWei closed 2 weeks ago
2
how to merge SyRI vcfs

#256 ChuanzhengWei closed 3 weeks ago
2
SYRI:IndexError: list index out of range

#255 lifannn11 closed 3 weeks ago
1
IndexError: list index out of range syri

#254 lifannn11 opened 3 weeks ago
8
Update python-igraph dependency to igraph

#253 szhorvat closed 3 weeks ago
0
Wrong CIGAR string

#252 MatteoSebastianelli closed 1 month ago
1
ERROR syri:201 - Length of query sequence of Chr1 is less than the maximum coordinate of its aligned regions

#251 Sabrili opened 1 month ago
3
INV vs INVDUP

#250 mparker2 closed 1 month ago
2
microhomology at ends of insertions

#249 mparker2 closed 1 month ago
4
Consult DUP/INVDP for details

#248 Gene2love opened 2 months ago
2
translocated to different chromosomes

#247 liu3c closed 1 month ago
3
Request for Guidance on Converting NOTALs to Presence in Syri Outputs

#246 Lancer-sudo-png opened 2 months ago
3
keyerror

#245 Hemaprasanth24 closed 1 month ago
3
Huge chromosome problem

#244 socialhang closed 2 months ago
6
About InvOut and Inv breakpoints

#242 Wenwen012345 closed 2 months ago
3
complicated region not detected correctly

#241 KewinOgink closed 2 months ago
2
Removes 'low-quality alignments' - what does this mean?

#240 c-hazel-f closed 2 months ago
1
conda installation

#239 sarah872 closed 3 months ago
2
How long does it take to generate the result file?

#238 Eika728 closed 2 months ago
3
add contig sizes (for reference genome) to VCF header

#237 mparker2 closed 4 months ago
3
nearly identical HDRs

#236 mparker2 closed 1 month ago
3
longer processing time for large genome?

#235 bijendrabio closed 2 months ago
1
add missing sys import

#234 mbhall88 closed 4 months ago
0
Aligning bacterial genomes with different number of contigs

#233 mbhall88 closed 5 months ago
2
How to identify breakpoint of large inversion

#232 bijendrabio closed 1 month ago
3
error running syri: IndexError: list index out of range

#231 QuintoHe closed 6 months ago
2
How to cite chroder?

#229 kuangzhuoran closed 7 months ago
1
Can't install on Ubuntu 22.04

#228 asishallab closed 7 months ago
2
translocation ascross chromosomes

#227 nicolo-tellini closed 7 months ago
1
Sequence length calculation error

#226 jiadong324 closed 5 months ago
6
ImportError: libicui18n.so.56: cannot open shared object file: No such file or directory

#225 hrpelg closed 5 months ago
2
chroder input format requirements

#224 estolle closed 7 months ago
2
IndexError: list index out of range(direction)

#223 Pengzw0909 closed 7 months ago
6
Syri doesn't deal with unequal chromosome comparison

#222 sadikmu closed 3 weeks ago
2
ERROR - No syntenic region found for chromosome: chr15. This is potentially caused by the two assemblies having different strands for this chromosomes. Reverse complement the chromosome to ensure that the same strands are analysed. Exiting

#221 ShirelyI closed 5 months ago
1
KeyError: 'Chr1'

#220 wangyangXie closed 5 months ago
1
IndexError: list index out of range after fixchr

#219 alistairhockey closed 8 months ago
0
SAM read error for BAM file from minimap2

#218 pdimens closed 8 months ago
3
Future-proof packaging of SyRI

#217 lrauschning closed 4 months ago
4
delta-filter unsecssful

#216 ABDULLAHGUJJAR closed 7 months ago
2
What's the header of SyRI output

#215 njliangdong closed 5 months ago
1
Matplotlib issue

#214 LeebanY closed 7 months ago
3
Reading Coords - WARNING - Chromosomes IDs do not match.

#213 renmiaozhen closed 7 months ago
6
Not able to compile v1.6.3 on Ubuntu 20.04

#212 DimitriDDLNL closed 3 weeks ago
3
syri reported an error:Reading coords - ERROR - aDir can only have values 1

#211 zzzzzzzy7 closed 9 months ago
2
Failure to compile on MacOS 13 / M1 Pro

#210 scottcain closed 10 months ago
3
Inversion OR Duplication ?

#209 jxlabWzZ closed 7 months ago
3
i was using syri with two genome files its give me a error

#208 Hemaprasanth24 closed 7 months ago
3
i have installed syri using conda but after running iam getting error in reading sam file i have used minimap2 to convert fna file to sam file

#207 Hemaprasanth24 closed 10 months ago
4
i was trying to install syri but it ended up with too many warnings and error

#206 Hemaprasanth24 closed 10 months ago
2