splatlab squeakr issues

splatlab / squeakr

Squeakr: An Exact and Approximate k -mer Counting System

BSD 3-Clause "New" or "Revised" License

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issues

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Added qf_get_num_occupied_slots_approx in gqf.h

#49 gmarcais closed 7 months ago
1
Error opening file for serializing.: Is a directory

#48 kbchoi closed 2 years ago
3
Segmentation fault

#47 pierrepeterlongo opened 2 years ago
0
Assertion `new_value < current_remainder' failed.

#46 MitraDarja closed 3 years ago
5
long reads?

#45 splaisan opened 4 years ago
0
Illegal instruction error

#44 marina-manrique closed 4 years ago
4
/src/count.cc can silently drop input files

#43 t-kranz opened 4 years ago
2
endless loop in /src/count.cc

#42 t-kranz opened 4 years ago
1
gqf/partitioned_counter.c:15:10: fatal error: 'sys/sysinfo.h' file not found

#41 tseemann opened 5 years ago
0
MacOS: use of undeclared identifier 'posix_fallocate'

#40 tseemann closed 5 years ago
3
Release 0.6 prints 1.0 with help -v

#39 tseemann closed 5 years ago
1
Following changes to get rid of Canonicalization

#38 rakesh-nori opened 5 years ago
0
boost/thread/thread.hpp error installing on macOS

#37 mamora opened 5 years ago
3
Can't install on OSX, expected identifier FREAD

#36 yeredh closed 5 years ago
3
Update release?

#35 johnlees closed 5 years ago
6
OSX compatibility, make Boost dependency optional

#34 dnbaker closed 3 years ago
0
Segmentation fault while counting human genome

#33 Colelyman closed 5 years ago
7
lognumslots.sh sometimes underestimates the required number of slots

#32 hmusta opened 6 years ago
2
Plans to support FASTA?

#31 hmusta opened 6 years ago
2
squeakr-query "Not Find: 0"

#30 nsohail19 closed 5 years ago
3
Command line parsing seems to be broken in exact branch

#29 rsharris opened 6 years ago
1
qf_serialize: Add the filename to the error message

#28 sjackman closed 6 years ago
2
Add a --version or -v flag

#27 tseemann closed 5 years ago
0
Doc command line doesn't much help

#26 tseemann closed 5 years ago
3
"squeakr-count" by itself segfaults

#25 tseemann closed 6 years ago
3
Segmentation fault (core dumped)

#24 nordhuang opened 6 years ago
27
Max Kmer length

#23 taranglute closed 6 years ago
1
Segfault in shift_remainders

#22 membranepotential closed 6 years ago
5
How to set the number of slots?

#21 membranepotential closed 6 years ago
1
What does squeakr-count count?

#20 membranepotential closed 6 years ago
4
segfault *after* kmer counts complete?

#19 ttriche opened 6 years ago
7
minor change to add -L/usr/local/lib/ before -lz in Makefile

#18 linsalrob opened 6 years ago
0
Segmentation fault + question

#17 GuillaumeHolley closed 6 years ago
4
qf_read usage

#16 brentp closed 6 years ago
7
segfault with fastq

#15 brentp closed 6 years ago
2
trying to understand why SSL is required

#14 rsharris closed 6 years ago
8
threadsafe-gqf/gqf.c:2043:26: error: ‘UINT64_MAX’ was not declared in this scope

#13 chelseaju closed 6 years ago
3
(very minor) misplaced(?) comment near the top of gqf.c

#12 rsharris closed 6 years ago
1
remove murmurHash3

#11 jameslz closed 6 years ago
1
Cannot compile on OS X

#10 standage closed 6 years ago
8
Fix argumenrs -> arguments

#9 ctb closed 6 years ago
0
segfault when run on a FASTA file

#8 sjackman closed 7 years ago
2
qf_init: Do not use fallocate on macOS

#7 sjackman closed 6 years ago
1
Document dependencies

#6 sjackman closed 7 years ago
2
reader.h: Use gzFile rather than gzFile_s*

#5 sjackman closed 7 years ago
0
error: unknown type name gzFile_s on macOS 10.11 El Capitan

#4 sjackman closed 7 years ago
2
Please tag a stable release

#3 sjackman closed 6 years ago
4
Illegal hardware instruction

#2 johnlees closed 7 years ago
9
Missing libz/libbz2 static libraries?

#1 ChristopherWilks closed 7 years ago
2