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Dear Developers,
I used IQ-TREE to construct gene trees for individual loci, with a total of 8276 loci. However, only 8229 were successfully constructed. I checked one example of the unsuccessful cas…
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This is what I'm typing into linux:
./bftools/bfconvert -debug -tilex 512 -tiley 512 -series 0 -compression LZW leica.scn leica_MAX/leica.tif
Here is the link to the rose red image：
https://github.…
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pour les microsats et les séquences, les données simulées sont monomorphes à tous les loci
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I am using the plugin in ImageJ
I have implemented a reader for my specific file format : using HandleExtraFileTypes to enable native recognition of the image in ImageJ. I can drag and drop iage for…
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Hi,
I'm currently using DSS to analyze 18 WGBS samples for differential methylated sites. I'm would like to run multifactor contrast to test for interaction effects among my treatments. However, af…
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`sort -k1,1 -n 2,2n loci_unsrt.tsv > losi_sorted.tsv` does not work.
Did you mean:
`sort -k1,1n -k 2,2n loci_unsrt.tsv > losi_sorted.tsv`
or
`sort -k1,1 -k2,2n loci_unsrt.tsv > losi_sorted.tsv`
…
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Hi,
I have some problems when I running the battenberg.pl using the following command:
battenberg.pl -o /data/CNV_result -r ucsc.hg19.fasta.fai -tb GI_Tumor.bam -nb GI_Normal.bam -ge XY -ig /data/…
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I have installed bsseq version 1.24.4 (as part of my efforts to get a 5hmC pipeline named mint (2017) running). mint requires the BioConductor package named dss, and somewhere along the way dss uses …
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Issue was raised on forum thread https://forum.image.sc/t/how-to-split-and-recombine-multiple-series-with-bfconvert/73662/2
In the thread the user had a multi resolution file (SCN format) with addi…
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Dear TAPIR development team,
After successfully running tapir on UNIX and have plotted the pi profiles for all loci, I am trying now to plot loci PI per time interval in R (the python script won't …