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While the peptigate pipeline aims to predict small open reading frame peptides, cleavage product peptides, and nonribosomal-peptide synthetase peptides, so far we've had the most success with cleavage…
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Hi
I'm trying to run micropan but when I try the blastall and downstream functions I got the headers error, I guess is due to the lack of a genome table. I'm stuck and I woud like to get help, I h…
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Hi,
I have 16S sequences generated from PacBio technology.
When I ran:
tax
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Hi,
I have output from different studies of 16S amplicon-sequenced reads with different sample sizes. They are from either V4 or V3-V4 regions but I want to analyze them together. I have run DADA2…
ghost updated
4 months ago
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Hi,
I'm running dada2 on a dataset of 7.000 human gut samples for the V3-V4 region using primers 341F/785R (published here: https://www.thelancet.com/journals/ebiom/article/PIIS2352-3964(23)00260-8/f…
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I've been trying to build our cloud-native pipelines using trioCanu, and think this might be useful for the canu developers.
Show below is the resource usage during `splitHaplotype`.
![splitHaplot…
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../tools/Varpipeline -q JTT20001087-FL-M04613-200220_S40_R1_001.fastq.gz -r ../tools/ref2.fa -n JTT20001087-FL-M04613-200220_S40 -q2 JTT20001087-FL-M04613-200220_S40_R2_001.fastq.gz -a -v
---[ next…
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## Bug report
We are using Nextflow with Azure batch to process collections of microbial genomes (whole-genome sequence data). We have began testing out processing larger collections of genomes an…
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Hi Ben,
I have got some minor issues about reads assigned to eukaryotes. I wonder if 14 universal single-copy ribosomal marker genes for prokaryotic community profiling are also applicable for euka…
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Hi I am running a large dolphin feces nanopore sequencing fastq file and I am running into memory issues I think...
How much memory should I ask for to run this sample? Thanks! Katie
Canu v2.2
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