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Currently, the /ontology GOLR core used for autocomplete within WebPhenote and table-editor is manually rebuilt periodically. This needs to be automated via Jenkins.
The plan is to rebuild the core…
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As a commonly used service, we should have a separate documentation page on this listed on:
https://monarchinitiative.org/page/services
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This section of the documentation links to the Ontology Lookup Service (OLS):
https://obophenotype.github.io/upheno/reference/core-concepts/
The link behind the text "[Unified Phenotype On…
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E.g. we have https://api.monarchinitiative.org/api/#!/bioentity/get_variant_phenotype_associations
but we lack this in https://biolink.github.io/biolink-model/docs/, so we should add to the yaml
…
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For example:
http://stage.monarchinitiative.org/disease/OMIM:608804
the variants are from ClinVar but there is no icon or evidence shown
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See: http://create.monarchinitiative.org/download/gomodel:5797c67200000003/owl
```
Individual:
Annotations:
****** ,
"2016-07-26"^^xsd:string,
"http://orcid.org/0000-…
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This bug was originally raised by @iimpulse
For reference, the query: https://api-dev.monarchinitiative.org/api/bioentity/gene/MGI:98297/variants?fetch_objects=true&start=0&rows=10&facet=true&face…
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We need better provenance of the Disease-Phenotype relationships.
Which relationships were derived from Orphanet?
https://monarchinitiative.org/disease/DOID%3A14323#phenotypes
cc: @annieolry
@…
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Should this a separate tool in the toolshed? Data access on the left sidebar?
I think this is an important dissemination/use case for our API and would be very useful for Galaxy users, who suffer a …
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When querying against `/nlp/annotate/entities`, the returned `"category"` field for each token is always an empty list.
For example,
```bash
curl 'https://api.monarchinitiative.org/api/nlp/anno…