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Hi, I have installed Param-medic and it works great on most of the example mzML files at:
https://noble.gs.washington.edu/proj/param-medic/
I get what appears to be good output for 9 of the 11 mzML …
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Howdy all,
I am having some errors processing .mzml data converted from bruker .baf files.
the error I get no matter what task I run is:
Run failed, Exception: Object reference not set to an…
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Hi Vadim,
I am using DIANN 1.9 to quantify my 3227 MS files (converted to mzML) from Orbitrap Astral.
However, it failed to generate output tables and reports and exited as in the screenshot below. …
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Dear Vadim
When I run one.mzML file on linux, I have no problem. When I run multiple.mZML files, I report an error：
ubuntu@node188:~$ ./1/diann-linux --f data2/1.mzML --f data2/2.mzML --fasta data…
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Hi,
we should test the reading and peak picking functions some time in the future how well it handles peculiarities in IMS data.
An addendum to the mzML spec says:
```
There was some concern that…
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```
unlink $HOME/R
```
https://www.liquidweb.com/kb/creating-and-removing-symbolic-links-symlinks/#:~:text=Use%20either%20the%20unlink%20or,correctly%2C%20it%20displays%20no%20output.&text=Notic…
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Spectra inputs:
- [x] .mzML
- [x] .raw
- [x] .mgf
Database inputs:
- [x] .fasta
- [x] .fa
- [x] .xml
- [x] .xml.gz
- [ ] .vcf
- [x] .fasta.gz
- [ ] Spectral library (.xml?)
Search resu…
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Hey, I'm having an issue running DIA-NN with an mzML input file converted from Thermo DIA Raw file. I'm using a spectral library generated by DIA-NN with `--gen-spec-lib` (which was successful). I als…
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### Basic information
* My operating system and version: Windows 11 Home, version 23H2
* My mzmine version: 4.2.0
### What happened
When using the mzwizard tool to produce a csv file under the…
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Hi MSGF+ Team
Thanks for your work in MSGF+.
** I get mass spectrometry data from Bruker TimsTOF and want to do database search using MSGF+.**
**At first, I convert the *.d files into mzML. …