-
Hello @ibn-salem @priesgo @ozlemmuslu @martinloewer @mostafiz2010
I'm having some problems with Easyfuse. At first, the test data is ok, and get results. But there is a problem in the Step Fetchd…
-
* pvactools version: 3.1.1
* Python version: 3.7 (from pVACtools docker hub image)
* Operating System: Debian 10 (from pVACtools docker hub image)
**Describe the bug**
When using NNAlign predict…
-
Hi authors,
Thanks for MSFragger. But I get the following error when trying to run MSFragger on my Mac (M1 pro, Ventura 13.3):
`java -jar MSFragger-3.7.jar open_fragger.params_edited data/W_N18/…
-
Greetings,
Thank you for providing this open source tool. I have been using the default setting of casanovo for most of my proteomics denovo analysis. Recently, I was interested to determine the su…
-
Hi,
Thanks for developing a great tool!
I was wondering:
1. What is the motivation for focusing only on predicting binding affinity (and presentation) to MHC Class I and not Class II?
- Is…
-
Hi,the following error occurs when I run NeoFuse
`NeoFuse -1 /home/myname/data/neoantigen/1.fastq.gz -2 /home/myname/data/neoantigen/2.fastq.gz -s /home/myname/ref/neofuse/STAR_idx/ -g /home/myname/r…
-
Hi,
After solving patch error (issue#14) by installing patch in our computation node, the pipeline run into a new error
```
Caused by:
Process `mixcr (Patient353_T1star : tumor_DNA)` termina…
-
* pvactools version: 1.5.2
* Python version: 3.7.3
* Operating System: red hat 6
I ran pvacseq with NetMHCpan and NetMHCpanII. The combined filtered output (295 lines) has is less than the lines …
-
We have followed the procedure in: http://pepquery.org/data/PepQuery_for_immunopeptidomics_data.pdf for evaluating potential neoantigens using no-enzyme.
PepQuery2 does not have option: -tag
Does …
-
Hi
I am wondering what is the best way to visualize the clones in a tree in order to accurately assess of the evolution or monoclonal or polyclonal.
I tried to check the stories Rdata and checked…