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INFO: Annovar reference files of build hg19 were given, using this build for all analysis.
INFO: Begin.
INFO: Proper directory already exists. Continue.
INFO: Proper directory already exists. Conti…
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* pvactools version: docker image: griffithlab/pvactools (1.3.5)
* Python version:
* Operating System: Host: Ubuntu 18.04
**Describe the bug**
After running prediction of class I and class II th…
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According to the following statement:
> pVACseq makes predictions for all transcripts of a variant that were annotated as missense_variant, inframe_insertion, inframe_deletion, inframe protein_alte…
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INFO: Annovar reference files of build hg19 were given, using this build for all analysis.
INFO: Begin.
INFO: Proper directory already exists. Continue.
INFO: Proper directory already exists. Conti…
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@TotalMiss commented on [Fri Jul 06 2018](https://github.com/griffithlab/pVAC-Seq/issues/344)
I try to use pVAC-Seq to identify neoantigens. I noticed there is a germline variation next to somatice…
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1) Update citation section of pVACtools. Add: https://doi.org/10.1038/s41588-018-0283-9
2) Include hyperlink of citation to the "Table of Contents" panel on the main page
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Hello,
I want to ask for help about how to speed up the pvacseq computation.
I use `NetMHC` method, `9` epitope length and all valid HLAs for `NetMHC` method, it costs about 1 hour to finish a s…
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Error info:
```
Combining Parsed IEDB Output Files
Completed
Running Binding Filters
Completed
Running Top Score Filter
Submitting remaining epitopes to NetChop
Waiting for results from Ne…
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The Shiny app will initially be **the** initial version of the iAtlas portal on release (pre-April 5th, 2018). Need to settle on a more suitable overall layout for visualization panels and any other i…
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many searches of peptides (like neuropeptides and neoantigens) have short targets. We could let the user set the upper length limit, and thus limit the possibilities to score against and shorten time …