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First weekly progress update of my project (description of my project plan)
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Session I unix lessons were linked to the unix-O2 repo, but the order needs to be checked and potentially modified for flow.
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```
What steps will reproduce the problem?
1.-bash-4.1$ ngs.plot.r -G hg19 -R genebody -C
/srv/gsfs0/projects/cho/riboseq/bam/R10_Rluc_control_arsenite_R1.hg19.bam -O
R10.genebody
.
What is the exp…
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Hi,
I am trying to compute Loss of Heterozygosity (LOH) using freec (version=11.6), but I get the following error while building pileup file
> [opened FIFO for writing] /tmp/sambamba-pid849194-iy…
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I am using Version 1.50. During my using, I think I need the solution to several problems. Thanks a lot to whoever can help me.
The first problem is that sometimes when I upload my NGS Sequencing Fil…
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First Trial
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Hi,
I'm trying to map and call alleles on fastq files from TCGA. However, out of the 400 samples I've run, only a very small number were called. The failed ones (as indicated from the output below)…
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Hi Taruna,
I have stumbled upon (another) issue with the bio-informatical analysis of my already de-multiplexed NGS data. I have forward (R1) and reverse (R2) reads for each sample, and each sample…
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Hi Thom,
I remember listening to your bioformatics chat podcast (https://bioinformatics.chat/propr) a while back and recently dove into the literature on several compositional data analysis reviews/…