shenlab-sinai ngsplot issues

shenlab-sinai / ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

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issues

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Update ngsplot to Python 3

#98 mestill7 closed 1 year ago
1
Maize genome issues

#97 Raoyugithub opened 2 years ago
0
Issue with Tair10 Genome

#96 jjp55 closed 1 year ago
0
ngsplot heatmap

#95 wang1ei opened 2 years ago
0
how to set the color in heatmap

#94 pangxueyu233 opened 2 years ago
0
ngsplotdb.py install not working

#93 niekwit opened 2 years ago
0
update to new bioconductor install system

#92 TomKellyGenetics opened 3 years ago
0
Genelist questions

#91 hugokitano opened 4 years ago
0
extension of the genome for mm10

#90 pangxueyu233 opened 4 years ago
0
Issue when running mm10 using custom bed file

#89 saimukund20 opened 4 years ago
0
draw multiplot of each group

#88 neptuneyt opened 4 years ago
1
length of 'dimnames' [1] not equal to array extent

#87 yeswzc opened 5 years ago
0
ngsplotdb.py install error

#86 soleilll closed 5 years ago
1
Error with own regions

#85 mpaya opened 5 years ago
0
headerIndexBam ... indexBam -> sapply -> sapply -> lapply -> FUN -> .Call

#84 singhsk2622 opened 5 years ago
0
.bam files originated from .bedpe as input

#83 vidaletal opened 5 years ago
1
Configuring variables...Error in if (!all(genome.coord$start <= genome.coord$end)) { : missing value where TRUE/FALSE needed

#82 vidaletal closed 5 years ago
1
"-r TSS shape" with -r bed option (Specific TSS on a bed file)

#81 LucaTucciarone opened 5 years ago
0
Flat Average Profile Plot

#80 mmYeung opened 6 years ago
0
Questions about gene list?

#79 a091601 opened 6 years ago
0
ngs.plot.r

#78 Liyi56 opened 6 years ago
2
Scaling for heatmaps

#77 ikremsky opened 6 years ago
1
confused about length normalization in custom regions

#76 gangxuehzau opened 6 years ago
0
specifying different subsets for the same config file

#75 igordot opened 6 years ago
0
Conda package

#74 sebastian-luna-valero opened 6 years ago
17
how can i scale y limit (range) ?

#73 ddhb closed 6 years ago
0
Empty plot_chnaged the bam file_still got empty plot

#72 mforoozani1 closed 6 years ago
0
How can I scale the plots of different histone marks

#71 gireeshkbogu opened 7 years ago
1
BED vs BAM

#70 gireeshkbogu closed 6 years ago
1
flat plots in ngsplots

#69 ShivPet opened 7 years ago
5
ngsplot error

#68 amitpande74 opened 7 years ago
3
isSecondaryAlignment error

#67 girdhar3 opened 7 years ago
1
s.pombe genome

#66 rojasp opened 7 years ago
0
Using more than one replicate

#65 kashiff007 opened 7 years ago
0
Errors while running ngsplot

#64 abhisheksinghnl closed 7 years ago
0
rn6 database

#63 abhisheksinghnl closed 7 years ago
0
hisat2 aligner

#62 ashcass opened 7 years ago
0
Use .cnt file to change library size normalization?

#61 mkrause-MPI opened 8 years ago
0
Genomic regions to plot in strand-specific

#60 tamarsegal opened 8 years ago
4
Reads mapping to mitochondrial genes are not counted when BAM file uses Ensembl chromsome names

#59 jdblischak opened 8 years ago
1
subread aligner problem

#58 pedrocrisp closed 8 years ago
4
Issues plotting read density in peak region

#57 shabs24 opened 8 years ago
1
Aligner

#56 KGillinder opened 8 years ago
0
BWA-MEM alignment

#55 beemo45 opened 8 years ago
0
cluster labels

#54 igordot opened 8 years ago
0
-RR (reduce ratio) parameter

#53 igordot closed 8 years ago
3
using custom gene list

#52 igordot closed 8 years ago
1
R 3.2 Bioconductor 3.2 updated problem

#51 portiaxu opened 8 years ago
4
Plotting only top 1000 rows in a heatmap

#50 aditiq opened 8 years ago
1
Update coverage.r

#49 RGunning closed 8 years ago
0