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shenlab-sinai
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ngsplot
Quick mining and visualization of NGS data by integrating genomic databases
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Update coverage.r
#49
RGunning
closed
8 years ago
0
[ngs.plot.r] average plots around TSS look different when i plot with "tss" and "genebody"
#48
ajjeon
opened
9 years ago
1
replot.r fail on test
#47
EricDeveaud
opened
9 years ago
2
'Deprecated' Error with ngs.plot.r after sys admin update Bioconductor
#46
december95
opened
9 years ago
0
Clustering information for NGSplot
#45
RGunning
closed
9 years ago
0
Return Cluster Information
#44
RGunning
closed
9 years ago
1
Custom region for hg19
#43
fpichon
closed
9 years ago
1
non protein coding genes with ngsplot
#42
GoogleCodeExporter
closed
9 years ago
1
genebody vs. bed file coordinates
#41
GoogleCodeExporter
closed
9 years ago
2
Patch for /bin/ExtractGName.R
#40
GoogleCodeExporter
closed
9 years ago
1
I keep getting flat metaplots from the ngsplot? Genome loading issue or data issue?
#39
GoogleCodeExporter
opened
9 years ago
9
Error with rnaseq mode
#38
GoogleCodeExporter
opened
9 years ago
1
Improve zebrafish annotation
#37
GoogleCodeExporter
opened
9 years ago
0
Error during ngs.plot.r
#36
GoogleCodeExporter
closed
9 years ago
2
plot only average profile instead of both heatmap and average profile
#35
GoogleCodeExporter
opened
9 years ago
0
command line for plotting multiple BAM files
#34
GoogleCodeExporter
closed
9 years ago
3
updating reference genome (eg. mm10)
#33
GoogleCodeExporter
closed
8 years ago
2
NGS Plot error
#32
GoogleCodeExporter
opened
9 years ago
5
TSS per gene?
#31
GoogleCodeExporter
closed
9 years ago
1
The output folder is not deleted after zip
#30
GoogleCodeExporter
opened
9 years ago
0
More flexible input format and name for configuration file
#29
GoogleCodeExporter
closed
9 years ago
1
More intelligent choice for low count cutoff
#28
GoogleCodeExporter
opened
9 years ago
0
Warning message about duplicated row names
#27
GoogleCodeExporter
opened
9 years ago
0
Custom normalization factors
#26
GoogleCodeExporter
opened
9 years ago
1
Enhance chromosome name check function
#25
GoogleCodeExporter
closed
7 years ago
2
Add middle color for bam-pair heatmaps
#24
GoogleCodeExporter
closed
9 years ago
1
Generate more running information
#23
GoogleCodeExporter
opened
9 years ago
0
Change default bam-pair colors to blue:yellow?
#22
GoogleCodeExporter
closed
9 years ago
1
Blank heatmap for peak bed file
#21
GoogleCodeExporter
closed
9 years ago
2
Error in plotting
#20
GoogleCodeExporter
opened
9 years ago
6
error not able to find bam file
#19
GoogleCodeExporter
closed
9 years ago
1
Support for single-base DNA methylation seq data
#18
GoogleCodeExporter
opened
9 years ago
3
Adjust margin size in heatmaps according to font size
#17
GoogleCodeExporter
closed
9 years ago
1
Allow users to adjust heatmap width
#16
GoogleCodeExporter
opened
9 years ago
0
Y-axis scale adjustment
#15
GoogleCodeExporter
closed
9 years ago
1
enhancement: ngsplotdb.py crashes with Python 2.6
#14
GoogleCodeExporter
closed
9 years ago
2
Code review request
#13
GoogleCodeExporter
closed
9 years ago
1
Code review request
#12
GoogleCodeExporter
closed
9 years ago
1
Code review request
#11
GoogleCodeExporter
closed
9 years ago
3
how to run this tool
#10
GoogleCodeExporter
closed
9 years ago
1
Support for paired-end reads
#9
GoogleCodeExporter
closed
9 years ago
2
Heatmap heights should be base on actual plotting regions
#8
GoogleCodeExporter
closed
9 years ago
1
Error when flanking region size is 0
#7
GoogleCodeExporter
opened
9 years ago
3
Add support for strand-specific alignments
#6
GoogleCodeExporter
closed
9 years ago
4
Can't perform analysis in Galaxy
#5
GoogleCodeExporter
closed
9 years ago
1
One line gene list => crash
#4
GoogleCodeExporter
closed
9 years ago
5
Execution halted
#3
GoogleCodeExporter
closed
9 years ago
1
gene list in ngsplot
#2
GoogleCodeExporter
closed
9 years ago
1
bowtie alignment error
#1
GoogleCodeExporter
closed
9 years ago
2
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