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```
For Graham with help from Ludo and Goodesll as needed:
1) Clean up HIV recipe
1.5) Build online Survey system with screenshots or webGL images to collect
feedback/voting/critiquing
2) Collect fe…
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### Description of feature
Tiara results are not reported in the BIN_SUMMARY process.
It would be nice to have it included to centralize the bin domain classification information.
Similarly to #5…
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I am trying to extract animal mitochondrial genome from short reads data using getorganelle. the script is-
get_organelle_from_reads.py -1 /home/pragya/hornbill/great/NZH/analysis/fastp/NZH_illumina…
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Hello,
I am attempting to assemble the _Arabidopsis_ plastome using the provided test dataset (simulated _Arabidopsis thaliana_ WGS dataset). After (i) installing/updating GetOrganelle, (ii) initi…
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I was running Novoplasty to assemble a mitogenome on adapter trimmed Illumina reads and got the following results:
Contigs_1_PH2.fasta
What does it mean? Can I use the contig for annotation and fu…
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Hi,
I am trying to perform GO enrichment analysis for non-model plants. Please let me know if I can use GO_MWU with non-model species for GO enrichment analysis.
I tried to download a gaf file (a…
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Error in (function (fastafile, blastdb = "blastdb", verbose = FALSE) :
Failed to make blast database blastdb/Araport11_genes.201606.pep.fasta
In addition: Warning message:
In system2("makeblast…
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Hello!Chenxi,@c-zhou
When I run the code
`syncasm -k 1001 -c 100 -t 48 -o green green.fastq`
I got a error:
![6b87038b96b0c9a89580983860337bf](https://github.com/c-zhou/oatk/assets/55218372/fd8c…
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RNAs can be transported in various ways, but the GO could do with some work to represent this properly. This links with bith the virus and localized translation topics for review.
1. Arc proteins i…
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Hi,
I used GetOrganelle to assemble chloroplast genomes and for two plant species, only one output is given and they do not appear as complete sequences, instead, seven and three contigs are give…