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Hi,
I will be working on signalling pathways quite a bit this year and will be needing GTP and GDP bound forms of the characterised signalling GTPases.
Systematic ID Gene name Product descriptio…
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This page
https://www.pombase.org/status/sequence-updates-pending
should be linked more clearly from this page:
https://www.pombase.org/status/sequencing-updates
(it used to be at one point. I…
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https://www.pombase.org/gene/SPBC13G1.05
NOT
GO:0045724 | positive regulation of cilium assembly | IEA with PTHR13317:SF4 | GO_REF:0000118
Note to self, add taxon restriction
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We have recently enabled diploid mode in PHI-Canto and used it to curate a Chemistry paper #127
It would be good to write up some rules and examples of when to use this in our FAQ documentation.
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There is only one annotation extension relation for phenotypes (assayed_using)
it is implemented as assayed_using(PomBase gene)
This would be modelled the same as the "has_input" relation de…
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since we have a news item for japonicus
"Documentation specific for JaponicusDB is under development. In the meantime, you can find lots of relevant information in the PomBase documentation, especi…
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We will maintain a file of terms where it should always be possible to specify "assayed_using" extensions.
To start with lets keep it simple with a single term
"cellular protein localization" (and c…
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These genes have had revised structures which means that they
These genes do not have signal peptides because the sequence does not match the UniProt sequence at the N-term.
https://www.pombas…
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The current README needs work. We need more details on the website part and the "Deploying" section should probably move to the [pombase-chado wiki](https://github.com/pombase/pombase-chado/wiki) (an…