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I am afraid I amstill having problems running LOVO (see closed ticket from last year "problem with LOVO". Please see log file with error below. I have used "--check-burden-files" with no issues and al…
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Hello,
I am running Regenie step 2 to do burden testing using the UK biobank data WES 450k on UKB RAP (regenie v2.2.4) and I would need your help.
I run this command :
```
regenie --step 2 --bed…
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After completing #1493, it's now time to do a bit of outreach to the community and ask all of the different members to add the `obofoundry` topic to their repos. It's pretty simple through the main pa…
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v0.3.
general
- can we distribute the kgx summary alongside the nodes and edges file?
nodes
- provided_by: should only refer to the actual provider for the node. E.g. for a FlyBase:FBgn0…
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Hi, I'm trying to run a small test sample for a quantitative trait through step 1 and I cannot get any Output other than the one listed here.
Any ideas of what is going wrong?
Thank you
…
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Hello,
I am interested in running REGENIE on many (on the order of ~20K) quantitative phenotypes. For now, I am just interested in a simple linear regression model (step 2). I am interested in runn…
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https://mp.weixin.qq.com/s/WZ32uGWJulqul3upymOU9g
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## Overview
We are mapping gene::disease associations from `morbidmap.txt`. All of the genes have MIM#s (see the `MIM Number` field). The MIM# for the 'diseases' are found within the string label of …
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**Describe the bug**
The versions of the `ldpred2.R` and `createBackingFile.R` scripts from the main branch to a MoBa sample/height phenotype, the predicted scores do not correlate with the phenotype…
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Hello,
I am running Regenie single-point analyses for 11 traits. For one of them (AKI), I get this error:
WARNING: null Firth failed for 1 phenotypes (list of traits written to '/projects/cgr/user…