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Hi there,
This is a question more than an issue. I've built a transcriptome using the PASA methodology (dnv assembly + reference assembly + PASA pipeline) using both control + condition samples tog…
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@khowe @epaule @gw3 @Paul-Davis
I'm wondering if excluding certain classes (e.g `View` and `UserSession`) could speed up the migration.
The following are the classes dumped by the ACeDB `tace` c…
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Hi Shaked,
Thanks for providing the code!
I'm trying to run it and get the following error. It seems to be working until the stage of writing the results to the summary file. Any idea why?
Th…
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Hi.
What is the best way to filter out seq error in normalize/assembly/estimate_abundance when we assembly over 10 samples together?
1) normalize use kmer25(fixed) and min coverage 2(fixed). Sh…
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Homey firmware 1.0.1
Kodi app version: 1.6.0
A voice command to start music by Artist works with one word, by example:
Play music by artist Armin --> works
Play music by artist Armin van Buur…
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Hello,
I mapped my RNA-seq reads with HISAT2 and assembled them with stringtie while using the Salmo salar whole genome as a reference in both stages. I understand that "Sensitivity is the proporti…
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Hi there,
I'm doing something weird but I can't find my mistake. I'm running gff compare v 0.9.8.Linux_x86_64.
I have 16 stringtie assemblies, but when I run gff compare on the individual assembli…
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I'm editing this list in place, now, so that there'll not be any surprises when I get back from England:
1) Development Deployment:
At time of writing, the development environment is active, and …
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I am currently profiling a couple of RNA-Seq analyses and by far the longest running process is not mapping or the main cufflinks process (as one would assume), but preparation of the genomic referenc…
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Написано: "Method of de nova assembler for transcript sequences".
1) Должно быть _de novo_.
2) Лучше вообще переформулировать так: "Method for the de novo reconstruction of transcriptomes from RNA-se…
ghost updated
9 years ago