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khmer_env)ljcohen@c8-22:~/dammit$ dammit annotate A_xenica.Trinity.fixed.fa --user-databases protein.fa --busco-group metazoa --n_threads 4
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dammit! a tool fo…
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### Description of the bug
even though I run pipeline from writable location on HPC cluster, it still complains about problems with installing Eukulele dependencies... I have checked and diamond is i…
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Hello I am trying to run the PASA training step (v. 1.8.11) with the following command but I get the following error
funannotate train -i $genome --cpus 1 -o $outdir -l $left -r $right --trinity $t…
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Hello,everyone
I installed PASA with a conda environment. My command is :/data/00/user/user157/miniconda3/envs/pasa/opt/pasa-2.4.1/Launch_PASA_pipeline.pl -c align.conf -C -R -g Split-1.fa -t 1.Ma6.…
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Hello,
Thank you for the tool.
Before installing CPAT, I created the environment with Python 3.11 and installed version 3.0.4 with pip install CPAT. I downloaded the Human_Hexamer.tsv and Human_logi…
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**Are you using the latest release?**
I am using 1.8.10 version through docker nextgenusfs/funannotate container
**Describe the bug**
I am running funannotate predict on a de novo genome assembly o…
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do it
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Hi again.
Today, I installed metaGT on our machine using `git clone`.
After installing it, I tried to test the minimal dataset described in README - 'Quick Start' - 4, but it did not work.
``…
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### Improvements to codify in the most recent version of `eukrhythmic`:
- [x] **MAD clustering parameters:** shift defaults coverage/pid to 0.95/0.95 for MAD clustering
- [x] **MAD clustering param…
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Hi,
I need to use this script（gff3_file_to_proteins.pl）, But my genome with a non-standard genetic code （table_6), what parameters do I need to modify?
Thanks a lot.
Yulin Bai