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Dear Foreign Contamination Screen developers.
In submitting sequences to Genbank as genome assemblies, I was wondering if FCS actually considers endogenous viral elements as contaminating sequences…
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It called my attention to find the same ID (column 15) being shared between elements that have different names (col. 10). This seems to be caused by using information coming from two consecutive align…
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Dear Canu team,
I have ultra-long read sequencing data (PromethiON flow cell from Oxford Nanopore) of _Drosophila erecta_ (genome size 145MB). Basecalling was done using Guppy version 6.5.7.
Prio…
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Hi,
I used the makeTEgtf.pl you provided [here](http://labshare.cshl.edu/shares/mhammelllab/www-data/TEtranscripts/TE_GTF/) to make **hg38 TE GTF file** from UCSC RepeatMasker track as you suggested …
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Hi GeMoMa team,
Thank you for developing GeMoMa. I tested GeMoMa on one of my reference genomes using 10 other reference species's annotation without RNA seq data. It predicts 19000 genes while the…
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There are a lot of possible configurations in which a colon separates two parts of an orthographic sentence. Currently there is a wide range of analyses for these, and I'm not sure how many distinct k…
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Dear Michelle,
Thank you for working on developing this tool, it looks quite interesting! I'm very curious to try it out on our ChIP-seq datasets from mESCs, and I started having a look at it. Ever…
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Update autograde system
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New issue occurring with dev releases 026 through to 028
I have a chord defined with:
```
{title: Chord markup test}
{define: Bm7 copy Bm7 display "Bm7"}
Just a [Bm7]
```
but the Bm7 doesn't …
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I've tried to use TELR with the data you mentioned in 'Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line', but failed to get the expected result.
An…